PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000402013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 23789.1 Da PI: 9.8831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.5 | 6.4e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++++G g+W++ ++ g++R++k+c++rw +yl MDP0000402013 13 KGAWSKQEDQKLIDYIQKHGEGRWNSLPKAAGLRRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.5 | 1.5e-13 | 67 | 135 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqky 47 g+ ++E++l+++++++lG++ +W++Ia +++ gRt++++k++w+++ MDP0000402013 67 GSIGEDEEDLIIRLHALLGNRdkqvalyysggdeccpypvawvriSWSLIAGRLP-GRTDNEVKNYWNSH 135 66679**************************************************.***********987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.985 | 8 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.27E-23 | 13 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.08E-11 | 15 | 60 | No hit | No description |
SMART | SM00717 | 1.1E-10 | 65 | 138 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.304 | 65 | 140 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-11 | 66 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 68 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-7 | 71 | 136 | No hit | No description |
SuperFamily | SSF46689 | 3.27E-23 | 109 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MRKPGCDKIE TNKGAWSKQE DQKLIDYIQK HGEGRWNSLP KAAGLRRCGK SCRLRWINYL 60 RPDLKRGSIG EDEEDLIIRL HALLGNRDKQ VALYYSGGDE CCPYPVAWVR ISWSLIAGRL 120 PGRTDNEVKN YWNSHIRKKL SKMGSTLDPK KPHDHHDPHL RRGTTAGVPV LQPDARKPIL 180 FASSSSDSMS TGAKIHSNES GLPDLNLDLS L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 10 | 140 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.29604 | 1e-102 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF401220 | 4e-66 | AF401220.1 Fragaria x ananassa transcription factor MYB1 (MYB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393410.1 | 1e-122 | myb-related protein Zm38-like | ||||
TrEMBL | A0A498I263 | 1e-111 | A0A498I263_MALDO; Uncharacterized protein | ||||
STRING | XP_008393410.1 | 1e-121 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09460.1 | 5e-58 | myb domain protein 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000402013 |