PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000319671
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 620aa    MW: 69314 Da    PI: 10.4352
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000319671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.0006432454123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  MDP0000319671 432 FSCNYCQRKFYSSQALGGHQNAH 454
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031627.4E-181492IPR004861Protein-tyrosine phosphatase, SIW14-like
Gene3DG3DSA:3.90.190.101.0E-111891IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527996.23E-131892IPR029021Protein-tyrosine phosphatase-like
PRINTSPR019112.5E-142740IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019112.5E-144660IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
PRINTSPR019112.5E-146377IPR020428Protein-tyrosine phosphatase SIW14-like, eukaryotic
SuperFamilySSF576676.07E-6429459No hitNo description
PROSITE profilePS5015711.427432459IPR007087Zinc finger, C2H2
PROSITE patternPS000280434454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0004725Molecular Functionprotein tyrosine phosphatase activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MVFLDPASPS RPIFLSSNRL NLRLIIYLCH EPYPEENLEF LRFHNIRLLQ FGIKGKTEPS  60
VSILKDTILE ALKILIDGRN HLVLIHCKRG KSDVIQRLRH SSSSKPIHSP ILVQEIVVDD  120
DNFVELVEGG EEGTEGVGGG VSSAAAASGF SATSDPVGLL QEQEHLSDLR KGKLDGCGKP  180
DLKIPSSTIE KLMGGSKTSS YSSFFISLFI PPSFDVRAEN NTECRGHAFP VTKHKSRRRW  240
RARGRWWRCA RNRMRQCGGR WRRRRRKGRR VDLEQYANGD FVRRHRKSPQ QFDNTRHSHR  300
RRFGLERRGV RSPWKSKPSC KNKKEFSLSE ISSNFSPSEA PVPPNLIHVS NMETPNAQNQ  360
QLVQDHHQEH PQAQNPNLPL DLSLSNKESN HGAKLELNLI NCFDSNNTSG NSSSETSSPK  420
GTTTTDFEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKKGLKGNCA AAEADAFDRL  480
PSLLSTYRFS SMASLPLHGS FNNRSLGIQV HSTIHKPCYQ TNTIGGHNGN SGWLRRPIDQ  540
QPAIGRLVPP NNVFHVQGGG IGSSSSSSSG GVGRFSYSTN VRKFSPETEG IGGLWWSNSS  600
IGHFNTKQDD LQKLDLSLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xri_A4e-21209132103At1g05000
1xri_B4e-21209132103At1g05000
2q47_A4e-21209132103Probable tyrosine-protein phosphatase At1g05000
2q47_B4e-21209132103Probable tyrosine-protein phosphatase At1g05000
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261269RRRRRKGRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7044222e-89KR704422.1 Crataegus pinnatifida var. major 2-C-methyl-D-erythritol4-phosphatecytidylyltransferase (ISPD1) mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-38zinc-finger protein 1