PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000310682

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 692aa MW: 80116.5 Da PI: 6.0589

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000310682	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	69	160	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g+ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel MDP0000310682 69 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFXPMKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgFSQWFVVQFSNVHNHELL 160 59******************8888.***************************************99866689***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-19	69	160	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-18	293	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.569	564	599	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-5	568	593	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0073	574	601	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD SEEASSIASQ LVKNDSTTSE AMVSPYVGMV 60 FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFXPM KKKPTGEHHR 120 DRKSVRCGCD AKMYLSKEVV DGFSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE 180 RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE 240 NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ 300 SITYGMLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR FPQTILTDLD 360 PGLRDAIRSE LPGTKHVISL WNILPKVSSW FSVSLGPRYV EFKSEFDVLY RLESTEDFEL 420 QWNQMISVFG LTTDKHIALL YSVRDSWAQS YIRGYFLACM ATATYSKSVD AFLKGVFSAQ 480 TCLRSFFEQV GISANFQSQA HRDMQYMHIK TSIPMEEHAR SILTPFAFNA LQQELVLAMQ 540 YAVSEMANGS YLVQHFKKID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRIYVVKNY 600 FQLPDKYCLN RWRKEGSLDF YNDHIAGTSD DEWFQDYQCL TETLFTESSI TKERSDYVRR 660 ELTTQLTRIL NEVRNMPECG GVAMDLTFSP TG

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MTSVPSKNIW IRRQQCPCGD WKCYVTYEGD SEEASSIASQ LVKNDSTTSE AMVSPYVGMV  60
FKSDDDAFEY YGNFARKNGF SIRKERSRLS PQLGIYKRDF VCYRSGFXPM KKKPTGEHHR  120
DRKSVRCGCD AKMYLSKEVV DGFSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKVLE LEKGIQGGQL PFLERDVRNF VQNRKKVVQE NDALLTEKRE  240
NDTLELLEAC KGTKEADEDF VYDFTVDEND KVEHIAWSYG DSVHAYTMFG DAVYFDTSYQ  300
SITYGMLFGA WLGIDNHGRT IFFGCVLLQD ETPRSFSWAL QTFVRFMRGR FPQTILTDLD  360
PGLRDAIRSE LPGTKHVISL WNILPKVSSW FSVSLGPRYV EFKSEFDVLY RLESTEDFEL  420
QWNQMISVFG LTTDKHIALL YSVRDSWAQS YIRGYFLACM ATATYSKSVD AFLKGVFSAQ  480
TCLRSFFEQV GISANFQSQA HRDMQYMHIK TSIPMEEHAR SILTPFAFNA LQQELVLAMQ  540
YAVSEMANGS YLVQHFKKID GERLVIWIPE EEQIHCSCKE FESSGLLCRH SLRIYVVKNY  600
FQLPDKYCLN RWRKEGSLDF YNDHIAGTSD DEWFQDYQCL TETLFTESSI TKERSDYVRR  660
ELTTQLTRIL NEVRNMPECG GVAMDLTFSP TG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028943521.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	M5WLZ4	0.0	M5WLZ4_PRUPE; Uncharacterized protein
STRING	XP_009374865.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	MDP0000310682

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]