PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000309382

Common Name

NAC7

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 263aa MW: 30253.5 Da PI: 9.203

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000309382	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	117	1.9e-36	16	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++Pw Lp v + + yfF++++ +++ g +++ra+ gyWk gk+k+++++ MDP0000309382 16 MPVGYRFRPTDEELVLHYLMRKVHAAPLPA-SIIPEFDVFETHPWGLPGDV---RXKRYFFHNENMNKNVGINSKRAAGCGYWKPIGKKKQIVNNs 107 699*************************.89***********554...3478*******************************987 PP NAM 96 .kgelvglkktLvfy...........kgrapkgektdWvmheyrl 128 ++e+vg++ktLvf +g+++++++t+W+mheyrl MDP0000309382 108 eSNEAVGIRKTLVFCerkrrrchhhhHGSTNTTTQTRWLMHEYRL 152 67778******7777666666559999999*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-43	10	178	IPR003441	NAC domain
PROSITE profile	PS51005	42.03	16	178	IPR003441	NAC domain
Pfam	PF02365	2.0E-23	17	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MENIKENYVI NGGVKMPVGY RFRPTDEELV LHYLMRKVHA APLPASIIPE FDVFETHPWG 60 LPGDVRXKRY FFHNENMNKN VGINSKRAAG CGYWKPIGKK KQIVNNSESN EAVGIRKTLV 120 FCERKRRRCH HHHHGSTNTT TQTRWLMHEY RLLASQANPT QVLEKESGNW VVCRIFQKKR 180 RPTQRTSDDM GVXSQRSSNC KKTRRLLEDY ISADDHSRRS DPDLTTLSSP SCSSDITHEL 240 SSNDNGELDD DQEGHSVSMP INI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-27	14	179	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-27	14	179	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-27	14	179	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-27	14	179	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-26	14	179	18	169	NAC domain-containing protein 19
3swm_B	1e-26	14	179	18	169	NAC domain-containing protein 19
3swm_C	1e-26	14	179	18	169	NAC domain-containing protein 19
3swm_D	1e-26	14	179	18	169	NAC domain-containing protein 19
3swp_A	1e-26	14	179	18	169	NAC domain-containing protein 19
3swp_B	1e-26	14	179	18	169	NAC domain-containing protein 19
3swp_C	1e-26	14	179	18	169	NAC domain-containing protein 19
3swp_D	1e-26	14	179	18	169	NAC domain-containing protein 19
4dul_A	9e-27	14	179	15	166	NAC domain-containing protein 19
4dul_B	9e-27	14	179	15	166	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	127	RKRRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.7922	0.0	bud\| leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269\|PubMed:20388856}.
Uniprot	TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315909.1	0.0	NAC domain-containing protein 83
Swissprot	Q9FY93	3e-46	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	D9ZJA6	0.0	D9ZJA6_MALDO; NAC domain class transcription factor
STRING	XP_008379080.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-45	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	MDP0000309382

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]