PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000308403
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 388aa    MW: 43590.2 Da    PI: 6.1863
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000308403genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.4e-081550136
                     TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRt 36
                     +g+W++eEdell++++ + +G g+W++ ++    +R+
    MDP0000308403 15 KGPWSPEEDELLLNYISKnHGHGSWRSLPKLAE-NRC 50
                     79**************7637777********99.998 PP
2Myb_DNA-binding49.31.1e-15106151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l+++++ +lG++ W+tIa+ ++ gRt++++k+ w+++l
    MDP0000308403 106 RGPFSKDEEKLIIQLHGMLGNR-WATIASQLP-GRTDNEIKNLWNTHL 151
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-20746IPR009057Homeodomain-like
SuperFamilySSF466893.14E-61050IPR009057Homeodomain-like
PROSITE profilePS512949.1641067IPR017930Myb domain
SMARTSM007170.002114102IPR001005SANT/Myb domain
PfamPF002491.5E-61550IPR001005SANT/Myb domain
CDDcd001674.74E-51750No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2083103IPR009057Homeodomain-like
SuperFamilySSF466891.3E-2186156IPR009057Homeodomain-like
PROSITE profilePS5129425.134101155IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-25104155IPR009057Homeodomain-like
SMARTSM007173.1E-14105153IPR001005SANT/Myb domain
PfamPF002492.1E-14106151IPR001005SANT/Myb domain
CDDcd001672.69E-10108151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MGRTPCCDNK KDLKKGPWSP EEDELLLNYI SKNHGHGSWR SLPKLAENRC IXVLIFLGYY  60
GLKHPRXWEN SCYPIXHGLL FPIGLQRCGK SCRLRWTNYL KPDIKRGPFS KDEEKLIIQL  120
HGMLGNRWAT IASQLPGRTD NEIKNLWNTH LRKGLVSMGI DPQTHEPLSS NCLSNNASAS  180
AATRHMAQWE SARLEAEARL SRDSSLFSRV PEKSESDHFL RLWNSEVGKS FRKLSTSDKF  240
ACQSPISQAS SSTKCGSLSA VTTEVGNLTG SSTMAGNHNE DLIYRPFLIN TEDVEYKPFQ  300
FNTEEVGYKP FQSITEEVEF KICQSNTEDV MAGSVSSCSN DLEDSSDTAL QLLLDYPTND  360
DMSFLENNAN DYATTPAELT PNSFICPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-211215324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.159950.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744650.0DQ074465.1 Malus x domestica MYB14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315746.10.0myb-related protein Myb4-like
SwissprotQ9M2D91e-107MYB17_ARATH; Transcription factor MYB17
TrEMBLQ2LME70.0Q2LME7_MALDO; MYB14
STRINGXP_008353981.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-105myb domain protein 17