PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000300382 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 26619.3 Da PI: 8.7421 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4e-11 | 108 | 149 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ MDP0000300382 108 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 149 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.5E-4 | 107 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.9E-5 | 107 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-7 | 108 | 152 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-6 | 110 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence Send to blast |
MVSLRRXRLL GLGLCCEIPP VLDPLPRVXN NGTTPQNFTR ANPVSVHPMP ANDAYQPDGN 60 TIVKAEFRSS TASGCSLSKE QHDVAGPPIK RRKRHRRKHA QNQEPCLMRG VYFKNMKWQA 120 AIKVDKKQIH LGTVGSQEEA AHLYDRAAFM CGREPNFELS EEEKKELRKF KWDEFLAMTR 180 HAITNKKHRR RSGAESEKRS ESPQLEDANW EDXKEEVNVL SASEDAEQDM LDS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008372497.3 | 1e-173 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
Refseq | XP_017187578.2 | 1e-173 | ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A498JXZ5 | 1e-139 | A0A498JXZ5_MALDO; Uncharacterized protein | ||||
STRING | XP_008356228.1 | 1e-173 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G13040.2 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000300382 |