PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000284819
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 561aa    MW: 64116.3 Da    PI: 6.1477
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000284819genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859.2e-27372455185
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rW+++ev aLi +r ++e+++ +  +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++++k+++kkr + +s+tc+yf+ql
  MDP0000284819 372 RWPQSEVEALILVRGSVESKFVELGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRRTKDTAKKR-PIQSKTCSYFNQL 455
                    8*********************************************************************8.99999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.516365429IPR017877Myb-like domain
CDDcd122031.23E-21371436No hitNo description
PfamPF138376.1E-20371457No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MHSNFGAAEI GNQHFMDSNS SVLPVFNPQK QNQNFLHQQF HPQQPQPCYH LSQLAHPIPI  60
THDLFQRQNQ LQFQALLQQQ QQEQQEEGRL PWQPSLPSFK LGLSESSGPH NLGFKNWKTQ  120
EYYGIRRESM CWKPLDAVVA DTTNKRQRQE EGESCRDLEG KHRLYGELEA IYNLAKMGEA  180
NQNQTGSGSA LTGENCSKNV EFPVVFVDPN GLNAAPADNV RVDNVSEASI GEERSVGKIQ  240
KRKRKSKMKE QLSSMTRFFE NLVKQVVDHQ ENLHKKYLEV IEKMEKERRE REVAWRYQAE  300
ENHKRETMAK LHEQALASSR EALIVSYIEE ITGQRVSLPP RQTPLLLQPD NVSEPQTAVE  360
LTPSQADRTN SRWPQSEVEA LILVRGSVES KFVELGSKGH VWEEVSALMA SMGYQKSARR  420
CKQKWENINK YFRRTKDTAK KRPIQSKTCS YFNQLGQLYS KTPTTVPSSS SSVSMDVSIQ  480
RQGYSELLEA FVAGRGTEVT HNLSNGNFEI SEMGFSRLDF NGISNGKVEN VQGDRGKEKE  540
NDEDDENMDE REDTDGEDFD E
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393594.10.0trihelix transcription factor GT-2-like
TrEMBLA0A498HNH90.0A0A498HNH9_MALDO; Uncharacterized protein
STRINGXP_008393594.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-39Trihelix family protein