PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000276765

Common Name

NAC4

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 350aa MW: 39820.4 Da PI: 6.7723

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000276765	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.7	3.8e-56	16	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 lppGfrFhPtdeel+++yL++kv ++ + + ++i evd++k+ePwdLp ++k +e+ewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ MDP0000276765 16 LPPGFRFHPTDEELISHYLCPKVLDNFFCA-KAIGEVDLNKCEPWDLPWRAKMGEREWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK-A 109 79**********************9888.89***********888999************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvg+kktLvfykgrapkg+kt+Wvmheyrl MDP0000276765 110 KTLVGMKKTLVFYKGRAPKGVKTNWVMHEYRL 141 99**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.477	16	166	IPR003441	NAC domain
Pfam	PF02365	6.9E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MENXSGFINV DEQMELPPGF RFHPTDEELI SHYLCPKVLD NFFCAKAIGE VDLNKCEPWD 60 LPWRAKMGER EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV 120 FYKGRAPKGV KTNWVMHEYR LDGKNSACNL PQTAKNEWVI CRIFQKSSGG KKIHISGLVR 180 PSPFVNELRS SLLPPLMDSP PYNSDARTTP TACETSHVSC FSDPPEDXKT QDDIMDSFNN 240 SNNHHNNDIP YACSSPSNPS AHLNSIYSNQ ITPNIGLLQH QNSVLMQDQS FMRMLIENQA 300 PNLRRSAKIE FSQDAGLSID ASSVVSNREM VQDDPSYSSA PVEFDCLWNY

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MENXSGFINV DEQMELPPGF RFHPTDEELI SHYLCPKVLD NFFCAKAIGE VDLNKCEPWD  60
LPWRAKMGER EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK TLVGMKKTLV  120
FYKGRAPKGV KTNWVMHEYR LDGKNSACNL PQTAKNEWVI CRIFQKSSGG KKIHISGLVR  180
PSPFVNELRS SLLPPLMDSP PYNSDARTTP TACETSHVSC FSDPPEDXKT QDDIMDSFNN  240
SNNHHNNDIP YACSSPSNPS AHLNSIYSNQ ITPNIGLLQH QNSVLMQDQS FMRMLIENQA  300
PNLRRSAKIE FSQDAGLSID ASSVVSNREM VQDDPSYSSA PVEFDCLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	13	172	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-56	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-56	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.12891	0.0	fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ177423	0.0	FJ177423.1 Malus x domestica NAC domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008379376.2	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-130	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	B6DXL4	0.0	B6DXL4_MALDO; NAC domain class transcription factor
STRING	XP_008379376.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-124	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	MDP0000276765

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Varkonyi-Gasic E,Gould N,Sandanayaka M,Sutherland P,MacDiarmid RM Characterisation of microRNAs from apple (Malus domestica 'Royal Gala') vascular tissue and phloem sap. BMC Plant Biol., 2010. 10: p. 159 [PMID:20682080]