PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000276590
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 678aa    MW: 76232.5 Da    PI: 7.2494
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000276590genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.3e-21120216185
       trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                    +Wt++ v++Li+++  ++++ + +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk++++  +++ +++++++ ++ d 
  MDP0000276590 120 KWTDNVVRLLIDVVACVGDDGSVEGgeglkrksgilQKKGKWKTVSKLMISKGCHVSPQQCEDKFNDLNKRYKRLNDXLGRGtSCRVVENPALMDA 215
                    7**************877777753224556667888**********************************************56999999888887 PP

       trihelix  85 l 85 
                    +
  MDP0000276590 216 M 216
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.4E-18118243No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MDGSELGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH QQHHMNVMGG VAGDRHPIGL  60
VEVKGSIPKV GSIIGKGKVV ASFNANNGYN LSDEDEQNYT DDESIEGAKG KKGCPWQRMK  120
WTDNVVRLLI DVVACVGDDG SVEGGEGLKR KSGILQKKGK WKTVSKLMIS KGCHVSPQQC  180
EDKFNDLNKR YKRLNDXLGR GTSCRVVENP ALMDAMPHLS AKLKDDVRKI LSSKHLFYKE  240
MCAYHNGQRT PDCQDLDHHG YSLPLGRCSK DDNGSAEEEA EENHDSEDDE LDNEDDNDAN  300
NDRERMRKMG EMKRAREEDG HLWPQYVLLD SFQVEMGEIF QDPXKSLWER RDWIKKQKQQ  360
LQEQRVSFQA EALEIEKQRY KWLRYCSKKD RELERLRLEN ERMKLENERR VLQLRQKELE  420
IDLRSAGFGV VIRDELGIFR GGAAIEGLNL AASLGFSNLI TCLHGPYSFI EVVDLRPIRP  480
LGARCGRTTP DPFRPNIAEM RIGEKEGAEK MAGKKGGSRL NVAIIHPDRG IGGAEKLIVD  540
AAVELASHAS VSGIFXVTVY CAFLPRHIFY RLHALCAYIW CFVALCMLFM WPLFDVILAD  600
QVSVVIPLLK LKKATKEFAP ISCELLSGMA DKILVNSKLT ASMFAKKFKH LDARGIEPAV  660
LYPAVNVNQF NEPANSYK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146461e-78bud| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955898.10.0uncharacterized protein LOC114823983
TrEMBLA0A498KCL90.0A0A498KCL9_MALDO; Uncharacterized protein
STRINGXP_009375065.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-58sequence-specific DNA binding transcription factors