PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000275800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 429aa MW: 47398.3 Da PI: 9.8212 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 6.9e-19 | 124 | 169 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++vk +G+++W++I++ ++ gR++k+c++rw + MDP0000275800 124 KGPWSPEEDEALQNLVKIYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 169 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 178 | 220 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd+ l++a++++G++ W+tIar ++ gRt++ +k++w++ MDP0000275800 178 PFSPEEDDTLIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 220 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.149 | 119 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-32 | 121 | 217 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-17 | 123 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-18 | 124 | 169 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-24 | 125 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.73E-16 | 126 | 168 | No hit | No description |
SMART | SM00717 | 2.1E-15 | 175 | 223 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 176 | 224 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.119 | 176 | 225 | IPR017930 | Myb domain |
CDD | cd00167 | 5.21E-12 | 178 | 221 | No hit | No description |
Pfam | PF00249 | 2.2E-15 | 178 | 220 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MKQPGRDQTT NHSIESIPPV RRWGRLWQFS FRWGERDRHV AVGEVRGKRK RRVVVDSCML 60 ITALPGKIHT RNGSDRLLGP AIPSYLYLFP RIYLYPPAPV SPSSSQNKDL FSMASTKKVV 120 DRIKGPWSPE EDEALQNLVK IYGPRNWSLI SKSIPGRSGK SCRLRWCNQL SPEVEHRPFS 180 PEEDDTLIRA HARFGNKWAT IARLLNGRTD NAIKNHWNST LKRKCSSMSE DLCSDVHDHP 240 PHKRSASVGA VSGTGLYFNP GSPSGSDLSD SSLHGGVSPS SQVFTPXARP VPPPIAPPPM 300 EAATSAVAVD PPTSLSLSLP GSESESCDGS NHMGSGFGSN PIVGPTQMVE QPHEVAAPPP 360 VVGLLPPPRQ SNLNNNQQFF SSEFLDVMQE MIRKEVRNYM TGIEQKGQCM QTEAIRNAVI 420 KRIXISKIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-37 | 123 | 224 | 3 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-37 | 123 | 224 | 3 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12645 | 0.0 | bud| fruit| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB627312 | 0.0 | AB627312.1 Malus x domestica mRNA, microsatellite: MEST188, clone: SAM01_20_H07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315844.1 | 0.0 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 3e-86 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | D9ZJ62 | 0.0 | D9ZJ62_MALDO; MYB domain class transcription factor | ||||
STRING | XP_008351984.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008367655.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-69 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000275800 |
Publications ? help Back to Top | |||
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