PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000263961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | WRKY | ||||||||
Protein Properties | Length: 352aa MW: 39497.5 Da PI: 8.8288 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.3 | 1.4e-27 | 183 | 243 | 1 | 59 |
---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a +Cpvkkkv+r+ ed ++++ tYegeHnh+ MDP0000263961 183 VKDGYQWRKYGQKVTKDNPsSPRAYFRCSFApRCPVKKKVQRCIEDDSILVATYEGEHNHD 243 58**************997369********99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.5E-28 | 174 | 244 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.089 | 178 | 245 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-23 | 180 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-32 | 183 | 244 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-23 | 184 | 243 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MAYLEGTLAS RLYLGRANSS VTDLARRVLH DEGFVFGPFF SKFLVSSLPL VNIIVISAIC 60 RFLNLYINLS ESINMDAHTL NKQKVVDSVP EDLQRLRKEN ETLRFLLQVM TAKCSTLEQQ 120 QLRXMHIQQQ PCDHRHIMTT NINSAIMSKR QRTDEHRYQF PASHDKTSQF LVKTDSKDNS 180 LIVKDGYQWR KYGQKVTKDN PSSPRAYFRC SFAPRCPVKK KVQRCIEDDS ILVATYEGEH 240 NHDAINDSAL FGQFSCSHKN IIVPVNFPSS GIGTNNDVIN ISPSPPEPVT LDLSLSGSSN 300 QENGGLGSPQ SMVSSRRVED YVASLTKDPD FTQTLVAAVA RSIARPANRP NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-18 | 182 | 243 | 13 | 72 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008347492.2 | 0.0 | probable WRKY transcription factor 40 | ||||
TrEMBL | A0A498J9J2 | 0.0 | A0A498J9J2_MALDO; Uncharacterized protein | ||||
STRING | XP_008347492.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008357270.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 7e-39 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000263961 |