PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000263595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37307.6 Da PI: 7.9404 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W+++++ g+ R++k+c++rw++yl MDP0000263595 14 RGLWSPEEDEKLVRHITTYGHGCWRKVPEQAGLQRCGKSCRLRWLNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.5e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T+eE++l+++++ G++ W+ Ia++++ gRt++++k++w+++ MDP0000263595 67 RGGFTPEEEKLIIRLHGVVGNR-WTHIAKCLP-GRTDNEIKNYWNSW 111 788*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.967 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.536 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1901430 | Biological Process | positive regulation of syringal lignin biosynthetic process | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MGHHYCCKQR KVKRGLWSPE EDEKLVRHIT TYGHGCWRKV PEQAGLQRCG KSCRLRWLNY 60 LRPDIKRGGF TPEEEKLIIR LHGVVGNRWT HIAKCLPGRT DNEIKNYWNS WIKKKLEKPS 120 SPPTTSPSNL DHQHNYQMGC SYPNQQVFMN QNFITKPTAA RDQILYPSPY PLFMFDTVSL 180 DETTNNNTNV RSADQHFPLA RSNNSNNNGT WILDQQQQHQ VQAFPSSTAP FTNNNMDAQF 240 LPSLLGSSIG NNNMVPVEVG SCSNIDDEEE ISMECLQSTT QELNALVHSR QAQQCSSNNF 300 HFWDSVEGPS SSNLRSANTL SSFPSYL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-27 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028960102.1 | 0.0 | transcription factor MYB26-like | ||||
TrEMBL | A0A498JP36 | 0.0 | A0A498JP36_MALDO; Uncharacterized protein | ||||
STRING | XP_009363433.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4112 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63910.1 | 5e-74 | myb domain protein 103 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000263595 |