PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000258417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | B3 | ||||||||
Protein Properties | Length: 494aa MW: 55376.8 Da PI: 8.968 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.5 | 6.7e-20 | 121 | 211 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k l++s+v + ++ lp f+++h + +++t+tledesgr++++k+i +k++ l++GW++F+ +++L egD++vF+l++ ++f +v + MDP0000258417 121 FVKSLVRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDESGRQYQLKYIACKTG----LSAGWRQFAASHNLLEGDVLVFQLVELTKF--KVYI 208 89************************644..678****************777776....***********************9876777..8888 PP E-S CS B3 97 frk 99 +r+ MDP0000258417 209 IRS 211 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-21 | 113 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-23 | 116 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.20E-28 | 119 | 210 | No hit | No description |
SMART | SM01019 | 4.2E-23 | 121 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.3E-17 | 121 | 211 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.563 | 121 | 212 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MARKVDGKPQ TPPSKPRLRP KPAANPKPSS LPTAKVKKPG KPNEKEVEHS MPMKELSNTQ 60 ITKFPHKHIV ALIDQKVDXS SGNTQYEFPV DGSPSRGQAK SSAVIRAQEV RSKLERQFPS 120 FVKSLVRSHV ASCFWMGLPS LFCKSHLPDK DITMTLEDES GRQYQLKYIA CKTGLSAGWR 180 QFAASHNLLE GDVLVFQLVE LTKFKVYIIR SNGMAEVDGA LGLXNLDNNT KQKDSGKFIN 240 LSVXFFLVSY KDNAETSTTP CNDSIRKRAH SPQLVVPKKK KIGLQRAEQS ENDSEXAGSE 300 VSEDLKSPAA ALQFEDIRSY ENFHILVDGL FLDXEFPEDV RKKYYKLCRS QKAFLHENVI 360 KGMNPNLIIG AISETVNIAD SIKACKVTTX RDDFVSWDKY LTAFELLGMN VGFLRDRICR 420 LANLADDSGA ALEAKMYKEA RIERSQAGIG IRNIEVKLEE MREACDEFGA AIESLRSKAE 480 INTLKFQEEV TAPW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 280 | RKRAHSPQLVVPKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15352 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008339962.2 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
TrEMBL | A0A498KFP0 | 0.0 | A0A498KFP0_MALDO; Uncharacterized protein | ||||
STRING | XP_008339962.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1007 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-36 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000258417 |