PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000246502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 371aa MW: 41197.7 Da PI: 8.2974 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.3e-05 | 130 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+ +++L +H+ H MDP0000246502 130 FPCTACGEIFPKPETLDHHQAIH 152 89******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.201 | 130 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 132 | 153 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 4.32E-14 | 155 | 370 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.8E-11 | 156 | 370 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MANISTLFNK FLSLLLLLLH LGCFSFIATT NHQTKPHHRR KLLKPTTLKP QKALSTSWSY 60 LKRIFTSKSC KITCTNIIQS HLSTPPRSSN HSIVSLVLPD PDTKYPPGSF PXSGISAGSH 120 QFFPLRNDIF PCTACGEIFP KPETLDHHQA IHHAVSELHD GDSGKNIVQI IFKTGWTDTR 180 KAPEIHRILK IHNSGKILSR FEEYRELVKS KAARNGACRR RDERCIADGN ELLRFHCSTF 240 VCDLGLNGNS GICNHEYCSI CGIIKSGFSP KLDGISTLSS SSRAHVAIPE DIEEEFKFMN 300 VKRAMXVCRV VAGRVGCDSE EDIDDVDKEG GGFDSLVGRG GSGVHSKVDE EELLVYNPRA 360 VLPCFVIIYT V |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.9176 | 0.0 | bud| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028944100.1 | 0.0 | uncharacterized protein LOC103429889 | ||||
TrEMBL | A0A498IMH5 | 0.0 | A0A498IMH5_MALDO; Uncharacterized protein | ||||
STRING | XP_008366236.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-101 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000246502 |