PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000238851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 1109aa MW: 124372 Da PI: 6.3495 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.2 | 1.1e-09 | 586 | 627 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ MDP0000238851 586 LRGVYF--KNMKWHAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 627 59**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00028 | 84 | 220 | 253 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF48452 | 2.47E-22 | 221 | 331 | IPR011990 | Tetratricopeptide-like helical domain |
Gene3D | G3DSA:1.25.40.10 | 1.1E-23 | 222 | 335 | IPR011990 | Tetratricopeptide-like helical domain |
PROSITE profile | PS50293 | 15.324 | 236 | 321 | IPR013026 | Tetratricopeptide repeat-containing domain |
PROSITE profile | PS50005 | 9.027 | 254 | 287 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 0.0099 | 254 | 287 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 5.812 | 288 | 321 | IPR019734 | Tetratricopeptide repeat |
SMART | SM00028 | 27 | 288 | 321 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF49764 | 3.14E-30 | 374 | 474 | IPR008978 | HSP20-like chaperone |
Gene3D | G3DSA:2.60.40.790 | 2.8E-26 | 376 | 465 | IPR008978 | HSP20-like chaperone |
PROSITE profile | PS51203 | 15.669 | 376 | 465 | IPR007052 | CS domain |
CDD | cd06466 | 2.51E-27 | 382 | 465 | No hit | No description |
Pfam | PF04969 | 6.2E-15 | 382 | 455 | IPR007052 | CS domain |
SMART | SM00380 | 6.0E-4 | 585 | 642 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-7 | 585 | 630 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-5 | 588 | 631 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF52058 | 2.55E-9 | 709 | 786 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.0E-7 | 711 | 775 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 2.55E-9 | 830 | 964 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.0E-7 | 841 | 916 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS51203 | 11.786 | 1028 | 1109 | IPR007052 | CS domain |
SuperFamily | SSF49764 | 4.06E-18 | 1030 | 1109 | IPR008978 | HSP20-like chaperone |
Pfam | PF04969 | 4.6E-11 | 1034 | 1108 | IPR007052 | CS domain |
Gene3D | G3DSA:2.60.40.790 | 1.8E-16 | 1037 | 1109 | IPR008978 | HSP20-like chaperone |
CDD | cd06466 | 6.11E-18 | 1038 | 1109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1109 aa Download sequence Send to blast |
MSSMVELHLN HSPKLTEILG LHKSLNTMRR IHMEGCTNLT ADFRKNIIQG WTSCGHGDIF 60 LXGIYDIPEW FQIVGIHEPN DVRFKVPXNF RGLTVCCVFK TYCPGFTVTN ITKRKALHTW 120 DESTCWVADS VLRLQSVLSN DVLHLQSGDE VSISAVTKAH GRGRVIGRVM KTGVNLVWDD 180 GNAGDKYTSI EEIGAVPRNN SSEETLPSPS VHTDGCSPMA SDLEKCANEA FIDDCFKLAV 240 DLYTHAIAFN PQSAELYTNR AQANIKSGNL TEAVADANKA IEFDPLXYKA YLRKGIACIK 300 LXEYQTAKAT LEIGAPLAPH ETRFANLIKE CDEKIAEETA VLPTASLENI TENVIPAKDV 360 QPASQPSNQV TVASVKPKYR PEFYQKPEEV VVTIFAEGIP AKDVNVDFGE QKLGVSIDVA 420 GEDTYYFQTH LFGKIIPEMC RFDVLSTKVE IRLAKAEPLH WTSLEFSEDN PVPLKVTGPV 480 VGVPSPSYLS SKPRTNPVTV HPMPSNDANQ PDGVILACLG HLSDRISTFF VNINVCMNTI 540 VKAEPRSFIA SGFSLSEEQH DVAGPPVKHR KQHRXKYAQN QEPSLLRGVY FKNMKWHAAI 600 KVDKKQIHLG TVGSQEEAAH LYDRAAFMCG REPNFELSEE EKQELRKFKW DEFLVMTRHA 660 ITNKKHMRRQ GAESEKRSES PQLEDSDWED DXEEVSGLSA SEDAEQDIFS SESFRNMXSL 720 RLLKLKNIKL TGSYHHLSKD LRWLCWHGFP XKVIPDDFDQ PNLVAIDLSY RLILVXEDTD 780 VKYWSLMAMI SQXFAFSLLX DSIPKDLGRR VGYNDKPRTI FNCKIEEPDI FISMGFERVT 840 INPPSLSGLF KLKMLDLSYC KDLLESKSVH CIEKMPNFSE MSSMVELHLK YSPKLTEILG 900 LHKSLNTMRR IHMEGCTNLT ADFRKNMLQR IDSLLCFRNV LSWINCYKFT KGKALHIWGD 960 STSNVANSVL HLQSVLSNDV LHLQSGDEVS ISAVTEAHGR GRVMKTGVNL FWDDGDGGDA 1020 YSSNDEIGAV PSNTSSDEKP EEVVVTIFTK GMAAKDVNVE FGEQILSVSI DVAGEGTYYF 1080 QPRLFGKIIP TRCRFDVLST KVGIRLAKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jki_S | 4e-35 | 378 | 1109 | 1 | 88 | SGT1-LIKE PROTEIN |
2jki_T | 4e-35 | 378 | 1109 | 1 | 88 | SGT1-LIKE PROTEIN |
2jki_U | 4e-35 | 378 | 1109 | 1 | 88 | SGT1-LIKE PROTEIN |
2xcm_C | 4e-35 | 378 | 1109 | 2 | 89 | SGT1-LIKE PROTEIN |
2xcm_D | 4e-35 | 378 | 1109 | 2 | 89 | SGT1-LIKE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU183101 | 0.0 | GU183101.1 Malus hupehensis sgt1-b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009347425.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
Refseq | XP_009347433.1 | 0.0 | PREDICTED: TMV resistance protein N-like | ||||
TrEMBL | A0A498J3I5 | 0.0 | A0A498J3I5_MALDO; Uncharacterized protein | ||||
STRING | XP_008348554.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 1e-39 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000238851 |