PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000232338
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 335aa    MW: 38334.9 Da    PI: 9.0143
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000232338genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.66.9e-132470349
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                   ie      v+f kRr g++ KA   S  C+aevavi+fs+ g+ly +
  MDP0000232338 24 IEKPNSLLVSFFKRRGGLFRKACQFSGPCGAEVAVIVFSPYGRLYVF 70
                   555556679************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.111474IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-141473IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-101636IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-181786IPR002100Transcription factor, MADS-box
PfamPF003193.0E-162370IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-103651IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-105172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPGIISTALP NQKHIQRRLV IKKIEKPNSL LVSFFKRRGG LFRKACQFSG PCGAEVAVIV  60
FSPYGRLYVF GHPSVDSVLS RLERVNTALH GRQYISMHAS SEAEDHDTDS SSIIESNSME  120
SYLXKDTEEM EEDEASKFWW DQPIENVKKV DELKQFKSSL EKLKAKIXII LXQSNSRAXP  180
TPKKKGKLRF LFIQXNTGRE YLTKAEAKTA GXPTSGEHQT GTKIKDDERG YKQADATTRE  240
ETNTQNTTET MAAAEEDRIE EGNWDALKNR SLRMLYVXVV LAKARGETRM FEHTFXDLEN  300
TLDKFKSCKP FTPFAEESVT QMXNXRISEH NWRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350236.26e-95agamous-like MADS-box protein AGL62
STRINGXP_008387182.11e-119(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-17AGAMOUS-like 61