PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000214472
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 437aa    MW: 48668.2 Da    PI: 7.7973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000214472genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10372417655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L++l P      +k  + ae+L +Ave+Ik+Lq
  MDP0000214472 372 SIAERMRRMRISERMKKLQDLFPDM----DKQINTAEMLDLAVEFIKDLQ 417
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.281366416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-13369430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-9370421No hitNo description
Gene3DG3DSA:4.10.280.105.4E-13371429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-7372417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9372422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MSSLLYKYNP NFKASEGELR KNHTAEFMDS NIFQQQHPQQ QQSSNLTRYR SAPSSFLMGL  60
MDNNGGSGGG GVEDLRYLQP SSPEVETVLA RFISSCNEPD HHDNGVQHHQ IEIEERPVNV  120
KEEAGDSVSN HNNGYSNSTH MMYQAPQAPL AQQVHGLDSS SFAAVNSTVM ENSMMQSKIX  180
VGNRSNLVRQ SSSPAGFFPN LTVDNGFNVM KDSAGYRAGN GVNGEASPST SRLGKQLNFS  240
SRPSSYSHRM PRIAENENGN SGEGSQPQPD HGLGNANGSN SHYHSSFPND SWVNSSFNDL  300
KRARDNXGNK FSTSTAFESH NNDFGNHNHG LTQHLSLPKD FEMPATEKYL QFEDSIPCKI  360
RAKRGFATHP RSIAERMRRM RISERMKKLQ DLFPDMDKQI NTAEMLDLAV EFIKDLQKQV  420
KTLKDTKAKC SCSSKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.106210.0bud| fruit| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008356731.20.0transcription factor bHLH130-like
RefseqXP_008356732.20.0transcription factor bHLH130-like
TrEMBLA0A498JH240.0A0A498JH24_MALDO; Uncharacterized protein
STRINGXP_008356731.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-45bHLH family protein