PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000211677 | ||||||||
Common Name | MYB17 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 196aa MW: 21920.7 Da PI: 9.6071 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.9 | 6.4e-15 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l + v++ G g+W++ + g+ R++k+c++rw +yl MDP0000211677 13 KGAWSKQEDEKLTEFVEKNGEGSWRSLPLAAGLLRCGKSCRLRWVNYL 60 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 66 | 111 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l MDP0000211677 66 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 111 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.31 | 8 | 60 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-11 | 12 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 12 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.79E-9 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.402 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-26 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 66 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.78E-12 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MRKPCCEKKK TNKGAWSKQE DEKLTEFVEK NGEGSWRSLP LAAGLLRCGK SCRLRWVNYL 60 RPNLKRGNFG EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNTH LRRKLIQMGV 120 DPNNHRIGHT QNIGLSKSSF GSRKANHPCK AANSQGDNDS DDHQKPFTDS ASGPESNTSC 180 SGLPDLNLDL TIGLPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 13 | 115 | 7 | 108 | B-MYB |
1h8a_C | 4e-27 | 12 | 115 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.17079 | 0.0 | leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB434547 | 1e-35 | AB434547.1 Fagus crenata FcMYBS2 mRNA for transcription factor MYBS2, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280904.1 | 1e-144 | myb-related protein 308-like | ||||
Swissprot | P81393 | 1e-72 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9SZP1 | 3e-72 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | D9ZJ54 | 1e-142 | D9ZJ54_MALDO; MYB domain class transcription factor | ||||
STRING | XP_008393409.1 | 1e-143 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 1e-74 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000211677 |
Entrez Gene | 103455610 |