PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000204390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 329aa MW: 35829.9 Da PI: 7.3275 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.0009 | 141 | 163 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H MDP0000204390 141 YQCKTCDRCFPSFQALGGHRASH 163 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 232 | 254 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F + L H+r+H MDP0000204390 232 HECSVCGAEFASGQALGGHMRRH 254 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.42E-8 | 140 | 163 | No hit | No description |
PROSITE profile | PS50157 | 9.162 | 141 | 168 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-10 | 141 | 165 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.077 | 141 | 163 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 143 | 163 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.42E-8 | 227 | 254 | No hit | No description |
Pfam | PF13912 | 1.4E-12 | 231 | 255 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 232 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 232 | 254 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 234 | 254 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MMMMEAADHQ DQEEAVLGYK DQAQMMIIKG KRTKRQRLTS PLSAIATTAS SSSSAGHDHD 60 HLQDQGLLGP RQRISTDVGP TASPATSSDQ FTEISTEEEE DMANCLILLA QGNSTPKPQN 120 PNLVNNNKAA SAAASAGLYL YQCKTCDRCF PSFQALGGHR ASHRKPGKQA NIHSTIQDNK 180 KALSFLEEVE EFDQFNNTST TLSLQISNRA FRALNSDTTS PCYYKNKANK VHECSVCGAE 240 FASGQALGGH MRRHRTLSST AATTAAAEAM NSHPQSQSGS KRPRNVLQLD LNLPAPEEEH 300 QQETNKFPFG AKKEQVIVFS ASPLVGCQY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028946595.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A498IHV0 | 0.0 | A0A498IHV0_MALDO; Uncharacterized protein | ||||
STRING | XP_008387527.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 2e-51 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000204390 |