PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000169485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | NAC | ||||||||
Protein Properties | Length: 575aa MW: 64844.8 Da PI: 4.5207 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.9 | 1.4e-51 | 18 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +pGfrFhPtdeelv +yLk+k+ +k+l++ +vi+e+d+yk++P +Lp+ +k+++++w+fFs+rd+ky++g r++rat++gyWkatgkd+++++ MDP0000169485 18 APGFRFHPTDEELVLYYLKRKICKKRLKI-DVIAETDVYKWDPDELPElsLLKTGDRQWFFFSPRDRKYPNGGRSSRATRHGYWKATGKDRTIVC- 111 69***************************.99**************9445788899***************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ vglkktLv+ykgrap+ge+tdWvmhey+l MDP0000169485 112 YSRSVGLKKTLVYYKGRAPSGERTDWVMHEYTL 144 9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-58 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.751 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-27 | 19 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MVTEDDSAAL FCDGHFAAPG FRFHPTDEEL VLYYLKRKIC KKRLKIDVIA ETDVYKWDPD 60 ELPELSLLKT GDRQWFFFSP RDRKYPNGGR SSRATRHGYW KATGKDRTIV CYSRSVGLKK 120 TLVYYKGRAP SGERTDWVMH EYTLDEEELK RCQNVQQYYA LYKVYKKSGP GPKNGEQYGA 180 PFREEDWVDD ESTVIKSAAD HQISVKQAVD VVSIDNVKVN GDVHYALNDI EEFMKQIADE 240 AVLPEMNGYG YTAPQVLSEE DTQSTLVDLY SREVICAEPV REFNPNVQQR NVDANFDFTQ 300 SSASQMQSYE ASEVTTAAPD IYDQDPPALH EEDFLEMDDL LGPEPTVPNT VNPVDDLQFG 360 ELDGLSEFDF YHDAAMFLHD LGPIDEGNVA HHQYMNSQGN NIVDQFEYHL QPNPVAENQV 420 NHLLNPESTQ INNQMWTNTE RAEPNQGSLS YSTPGVVYES SNFPSQATQN QSGNEAAGAT 480 SQFSSALWAF VESIPTTPAS ASENALVNRA FERMSSFSRL RINTASTTVA AGNDSETRRA 540 GRKRGFFFLP VLVALCAVFW VLIATLRPWG RSLST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-48 | 19 | 144 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 44 | KRKICKKRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15056 | 0.0 | bud| fruit| leaf| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Transcriptional activator that acts as positive regulator of AOX1A during mitochondrial dysfunction. Binds directly to AOX1A promoter. Mediates mitochondrial retrograde signaling. {ECO:0000269|PubMed:24045017}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold and drought stresses. {ECO:0000269|PubMed:17158162}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028965254.1 | 0.0 | NAC domain-containing protein 17-like | ||||
Swissprot | Q9XIC5 | 1e-170 | NAC17_ARATH; NAC domain-containing protein 17 | ||||
TrEMBL | A0A498J057 | 0.0 | A0A498J057_MALDO; Uncharacterized protein | ||||
STRING | XP_008381037.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-160 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000169485 |