PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000167314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29408.3 Da PI: 9.4432 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.3e-16 | 24 | 68 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W +eEd++l+++v+ +G g+W+t+++ g++R +k+c++rw +yl MDP0000167314 24 WKPEEDLILKQYVETHGEGNWATVSKLSGLKRGGKSCRLRWKNYL 68 *****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.2e-16 | 74 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l MDP0000167314 74 RGDMSQDEKDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 119 7899******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.337 | 16 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.7E-28 | 19 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.18E-11 | 24 | 68 | No hit | No description |
Pfam | PF00249 | 7.2E-14 | 24 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 24 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.923 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 74 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-11 | 77 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MVMAKNKRSS VVKAGNARPK KNWWKPEEDL ILKQYVETHG EGNWATVSKL SGLKRGGKSC 60 RLRWKNYLRP NIKRGDMSQD EKDLIIRMHK LLGNRWSLIA GRLPGRTDNE VKNYWNTHLN 120 KNTSCCPAGG KRKGXSMTDY SNHDTNITKK KNKINTSKTS STATATADNP MIISSTVRSP 180 KDTNSDHHHQ HHEEPNDGPI FATTSTTEES CFYYDVDIES PRELHYYMPS CSSXFNPAFX 240 FDDEPFIGYM DPFLLFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-22 | 24 | 123 | 10 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in the trichomes of new leaves. {ECO:0000269|PubMed:24803498}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008377302.2 | 0.0 | transcription factor MYB82 | ||||
Swissprot | Q9LTF7 | 1e-65 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A498HUF7 | 0.0 | A0A498HUF7_MALDO; Uncharacterized protein | ||||
STRING | XP_008377302.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13545 | 20 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 4e-65 | myb domain protein 82 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000167314 |