PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000160924

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Trihelix

Protein Properties

Length: 288aa MW: 33181.4 Da PI: 9.1758

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000160924	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.1	5.8e-24	38	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li++r e+e r + +k+ kp+We+vs+km ergf+r+p+qCk+kw+nl ryk ++++ + s ++cp+f++l+ MDP0000160924 38 QWASEETRELIAIRGELEIRDSVvSKRSKPQWEAVSSKMTERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFEELH 120 7***************9988648899********************************9999997....4667****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.606	31	96	IPR017877	Myb-like domain
SMART	SM00717	8.4E-4	35	98	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-6	37	97	IPR009057	Homeodomain-like
Pfam	PF13837	2.5E-23	38	121	No hit	No description
SuperFamily	SSF46689	9.4E-6	38	121	IPR009057	Homeodomain-like
CDD	cd12203	1.44E-18	38	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MYGGGGDEEA SVGLRGGGGG GGGGMMKMMI SSPTGAGQWA SEETRELIAI RGELEIRDSV 60 VSKRSKPQWE AVSSKMTERG FNRTPEQCKC KWKNLLIRYK GKETSDPESG RECPFFEELH 120 AVFTERAKNM QRLLLESEAG SARPKKLVKR KSRSGQWSDE LSEDAEEEDS HGKGKKRKGE 180 GVVLARATNP ASGSSTSSVQ ELLKEFFQHQ QRMEMEWRQM MEKRALERRL FEEEWRQKME 240 KTERERLMVE QAWREREEER RIREESRAER RDALLTTLLN RLINQTNF

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.14508	2e-44	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373496.1	0.0	trihelix transcription factor GT-3b-like
TrEMBL	A0A498JPU3	0.0	A0A498JPU3_MALDO; Uncharacterized protein
STRING	XP_008373496.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-32	Trihelix family protein

Link Out ? help Back to Top
Phytozome	MDP0000160924