PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000159011 | ||||||||
Common Name | MYB111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 26928.6 Da PI: 8.8228 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.6e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d++k +G g+W++ ++ g++R++k+c++rw +yl MDP0000159011 13 KGAWSKQEDQKLIDYIKTHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54 | 4e-17 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E+el+++++++lG++ W++Ia +++ gRt++++k++w+++ MDP0000159011 66 RGNFEQDEEELIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 899*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-24 | 4 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.411 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.25E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.777 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.76E-11 | 68 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MRKPCCEKEG TNKGAWSKQE DQKLIDYIKT HGEGCWRSLP KAAGLHRCGK SCRLRWINYL 60 RPDIKRGNFE QDEEELIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIKMGI 120 DPNNHRLNQI IPRPNPQNDS VSPAATSSGS MSNINACTKT PLKSSDDQID HRASEAASVL 180 EDETSGPSSR DLNLDLTIAF PEPSLQVEEG MPKLIKGSNT TAREIETNLQ HLPTLVLFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.13062 | 0.0 | bud| fruit| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, flower buds, and siliques. {ECO:0000269|PubMed:9839469}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF772788 | 0.0 | KF772788.1 Malus hybrid cultivar cultivar Radiant MYB111 mRNA, complete cds. | |||
GenBank | KJ026365 | 0.0 | KJ026365.1 Malus spectabilis MYB111 mRNA, complete cds. | |||
GenBank | KJ026366 | 0.0 | KJ026366.1 Malus micromalus MYB111 mRNA, complete cds. | |||
GenBank | KJ126858 | 0.0 | KJ126858.1 Malus hybrid cultivar MYB3 (MYB3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001281006.1 | 1e-178 | myb-related protein 308-like | ||||
Swissprot | Q38851 | 2e-76 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | D9ZJ51 | 1e-177 | D9ZJ51_MALDO; MYB domain class transcription factor | ||||
STRING | XP_008381316.1 | 1e-178 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 9e-79 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000159011 |
Entrez Gene | 103444173 |