PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000153280
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 200aa    MW: 22880.8 Da    PI: 7.0615
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000153280genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93e-10811131347
                      HHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  13 vdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      v++v++  ++ W++Ia +++ gRt++++k++w++ 
    MDP0000153280  81 VKLVHETETK-WSLIAGRLP-GRTDNEIKNYWNSC 113
                      789*******.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.56264118IPR017930Myb domain
PfamPF002492.4E-881113IPR001005SANT/Myb domain
CDDcd001674.15E-581111No hitNo description
Gene3DG3DSA:1.10.10.604.7E-1381114IPR009057Homeodomain-like
SuperFamilySSF466892.28E-882121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MKKSKDTWSN LVVEGHGFGP GFLAGHANLF HVILEKPVRS ASDPLLSQLL PQAPGSKPVD  60
MNNSRNRNKN NRNQGEYQLK VKLVHETETK WSLIAGRLPG RTDNEIKNYW NSCLGKKMKQ  120
NRAVLKTEQE SSEPNNIKAM EVNALTIERE DAFKREENFK FGLNVNEFFD CSGSDDGPLN  180
LEWMNKFVEM DESWFTLHDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018505093.19e-58PREDICTED: transcription factor MYB114-like
TrEMBLA0A498HV105e-56A0A498HV10_MALDO; Uncharacterized protein
STRINGXP_008337000.15e-76(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1672278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-12myb domain protein 4