PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000136195 | ||||||||
Common Name | C2H2L4, LOC103451499 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 620aa MW: 66554.7 Da PI: 9.1245 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.2e-05 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H MDP0000136195 77 FICEVCNKGFQREQNLQLHRRGH 99 89*******************88 PP | |||||||
2 | zf-C2H2 | 13 | 0.0003 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ MDP0000136195 153 WKCEKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.38E-7 | 76 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 7.0E-6 | 76 | 99 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0052 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 77 | 99 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 3.1E-5 | 77 | 99 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 118 | 148 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.9E-5 | 141 | 174 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.38E-7 | 148 | 173 | No hit | No description |
SMART | SM00355 | 130 | 153 | 173 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MAASSSSGAP LFGIREEDQN QKMRQQHSST TPTSSTAAPA APPQKKRRNQ PGTPSKTDPE 60 AEVVALSPKT LMATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKTT KEPKRKVYLC 120 PEPTCVHHDP SRALGDLTGI KKHYFRKHGE KKWKCEKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR SQFMTLQEFE VVCEYRRDSF ITHRAFCDAL AQESARHPPS LTTIGSSLYG 240 GGSLSNTGLG LSHQVVGPPH QLSSLDHSNQ PSDILRLGGS SGAAAADRAG QFDHLLSSPS 300 MGSSFRPAQS SAASFFMTGA SDHDQSNQQQ YHDQDKSFHG LMQFTHHSPH QHHSGAGTNL 360 FNVPFVSNST NSNSASNSXS LISPNHFNTN ANGSAXGGGN EVSNNLFAGH IMGGGDHMSS 420 GVPSLYSNNG NSQQQAISSH MSATALLQKA AQMGSNTSNN NNTTSLLRSF GSSSSTTTKP 480 DRPGTLVPSS LGRMFGSDQT DQSHLQDLMN SFASGGGGSS IFGNAAFGRY DASANRAINM 540 EDAKLQQHIG LNNIGGGSDR LTRDFLGVGQ VVRSMSGGFS HQRSEQQHGG MEMLSSLDSE 600 SNGAAAAPST QSFGGGGNFQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-30 | 149 | 226 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-30 | 149 | 226 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25156 | 5e-40 | leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001280886.1 | 0.0 | zinc finger protein MAGPIE-like | ||||
Swissprot | Q9ZUL3 | 1e-138 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | D9ZIU0 | 0.0 | D9ZIU0_MALDO; C2H2L domain class transcription factor | ||||
STRING | XP_008360021.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1536 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02070.1 | 1e-120 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000136195 |
Entrez Gene | 103451499 |
Publications ? help Back to Top | |||
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