PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000132919 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 375aa MW: 41670.5 Da PI: 7.9082 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.4 | 5.4e-05 | 134 | 156 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F+ +++L +H+ H MDP0000132919 134 FPCTACGEIFPKPETLDHHQAIH 156 89******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.201 | 134 | 161 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 157 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.06E-14 | 159 | 374 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.4E-12 | 161 | 374 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MANISTLFNK FLSLLSSSST SXVSLPPPLP TXPKXPHHRR KISTHLXKPS TLKPQKALST 60 SWSYLKRIFT SKSYKITCTN IIQSHLSTPP RSSHHSIVSL VLPDSDPKYL PGSLPESDIS 120 ADSHQLFPLR NDIFPCTACG EIFPKPETLD HHQAIHHAVS ELHDGDSGKN IVRIIFKTGW 180 TDTRKAPEIH RILKIHNSGK ILSRFEEYRE LVKSKAARNG TVRRRDERCI ADGNELLRFH 240 CSTFVCDLGL NGNSGICNHE YCSVCGIIKS GFSPKLDGIS TLSSSSRAHV AIPEDIEEEF 300 QFMNVKRAML VCRVVAGRVG CDTEEDIDDV DKEGGGFDSV VGREGSGVHT RVDEEELLVF 360 NPRAVLPCFV IVYTV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.22609 | 0.0 | bud| fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017183172.2 | 0.0 | uncharacterized protein LOC103418759 | ||||
TrEMBL | A0A498K9V9 | 0.0 | A0A498K9V9_MALDO; Uncharacterized protein | ||||
STRING | XP_008366236.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10668 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-118 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000132919 |