PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000132671 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 388aa MW: 43582.4 Da PI: 6.0599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.7 | 5.4e-08 | 15 | 50 | 1 | 36 |
TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRt 36 +g+W++eEdell++++ + +G g+W++ ++ +R+ MDP0000132671 15 KGPWSPEEDELLLNYISKnHGHGSWRSLPKLAE-NRC 50 79**************7637777********99.998 PP | |||||||
2 | Myb_DNA-binding | 49.3 | 1.1e-15 | 106 | 151 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E++l+++++ +lG++ W+tIa+ ++ gRt++++k+ w+++l MDP0000132671 106 RGPFSKDEEKLIIQLHGMLGNR-WATIASQLP-GRTDNEIKNLWNTHL 151 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 7 | 46 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.14E-6 | 10 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.164 | 10 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 0.0021 | 14 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 15 | 50 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.47E-5 | 17 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 83 | 103 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.33E-21 | 86 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.134 | 101 | 155 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-25 | 104 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-14 | 105 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 106 | 151 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.24E-10 | 108 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MGRTPCCDNK KDLKKGPWSP EEDELLLNYI SKNHGHGSWR SLPKLAENRC IXVLIFLGYY 60 GLKHPRXWEN SCYPIXHGLL FPIGLQRCGK SCRLRWTNYL KPDIKRGPFS KDEEKLIIQL 120 HGMLGNRWAT IASQLPGRTD NEIKNLWNTH LRKGLVSMGI DPQTHEPLSS NCLSNXASAS 180 AATRHMAQWE SARLEAEARL SRDSSLFSRV PEKSESDHFL RLWNSEVGKS FRKLSTSDKF 240 ACQSPISQAS SSTKCGSLSA VTTEVGNLTG SSTMAGNXNE DLIYRPFLIN TEDVEYKPFQ 300 FNTEEVGYKP FQSXTEEVEF KICQSNTEDV MAGSVSSCSN DLEDSSDTAL QLLLDYPTND 360 DMSFLENNAN DYATTPAELT PNSFICPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-21 | 12 | 153 | 24 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.15995 | 0.0 | bud |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074465 | 0.0 | DQ074465.1 Malus x domestica MYB14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001315746.1 | 0.0 | myb-related protein Myb4-like | ||||
Swissprot | Q9M2D9 | 1e-108 | MYB17_ARATH; Transcription factor MYB17 | ||||
TrEMBL | Q2LME7 | 0.0 | Q2LME7_MALDO; MYB14 | ||||
STRING | XP_008353981.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-106 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000132671 |