PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000129941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 265aa MW: 30453.1 Da PI: 9.7477 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.5 | 5e-11 | 140 | 181 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa ++++a+ MDP0000129941 140 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 181 79**98..47*********4.....5********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 5.6E-4 | 139 | 196 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-5 | 139 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-7 | 140 | 184 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-6 | 142 | 186 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVSLRRRRLL GLGLCCEIPP VLDPLPRVAN NGTTPQNFXR TNPVSVHPMP SNDANQPDGQ 60 AWQGTKRKMV RWNDHLIKPE NRFHNDNISF NNTIVKAEPR SLTASGSILS KEQHDVAGPP 120 IKRRKRHRRK HAQNQEPCLM RGVYFKNMKW QAAIKVDKKQ IHLGTVGSQE EAAHLYDRAA 180 FMCGREPNFE LSEGEKQELR KFKWDEFLVM TRHAITNKKH RRRQGAESEK RSESPQLEDG 240 DWEDDKEEVN GLSASEGAEQ DMLDS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355008.2 | 1e-148 | ethylene-responsive transcription factor-like protein At4g13040 isoform X2 | ||||
TrEMBL | A0A498JXZ5 | 1e-119 | A0A498JXZ5_MALDO; Uncharacterized protein | ||||
STRING | XP_008355004.1 | 1e-145 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5457 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 3e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000129941 |