PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000125939
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 249aa    MW: 28072.7 Da    PI: 8.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000125939genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-1071120455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h e+Er+RR+++ +  + Lr+llP+ +   ++K s ++   +Av+YIk+ q
  MDP0000125939  71 MHRENERQRRKEMGTLHASLRSLLPPEF--IKGKRSISDHTNEAVNYIKHIQ 120
                    7*************************65..********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.12E-665124No hitNo description
SuperFamilySSF474593.01E-1066137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.21467119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-771120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-772136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MFPLHQSKKL VFQISSNPHH HQDHTISEDH RVRGYGDRGK GRLEKLGVTL DYMMDDDHNS  60
NDHNKKNKTL MHRENERQRR KEMGTLHASL RSLLPPEFIK GKRSISDHTN EAVNYIKHIQ  120
NRIRRLDSKR AELKKVSNLS SSSTSSDDHG GESSYRGLLS CFKVDPCSGG VQIVIGTTIG  180
FRSGEEGLPF SISRVLEVLL EQGLCVVSCV SSKVDDRLLH TIQSEVNDLE SIDLSALEQK  240
LAEVLPPSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009348628.11e-143PREDICTED: transcription factor bHLH36-like
TrEMBLA0A498JIZ40.0A0A498JIZ4_MALDO; Uncharacterized protein
STRINGXP_008376489.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.11e-32bHLH family protein