PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000121370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 143aa MW: 16224.2 Da PI: 8.1431 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.1 | 3.3e-05 | 24 | 46 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ H++ H MDP0000121370 24 FECHYCDRKFKSSQAWGGHQNAH 46 89***********9999998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.67E-6 | 20 | 52 | No hit | No description |
PROSITE profile | PS50157 | 10.471 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-6 | 24 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 26 | 46 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKLFGFSVTE DSDQVAMIIE SKKFECHYCD RKFKSSQAWG GHQNAHKRER QLERMAMLEH 60 VQHLRHPPPN HDHRDQNQLV AASVPIFVCS SGSTSNINGD HAGAARVPSV VAPRNPHGPY 120 FKQIEQVVPN TDEGNYVDLR LRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008343035.1 | 1e-105 | zinc finger protein GIS2-like | ||||
TrEMBL | A0A498HLW8 | 2e-78 | A0A498HLW8_MALDO; Uncharacterized protein | ||||
STRING | XP_008343035.1 | 1e-105 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3903 | 24 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58070.1 | 4e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000121370 |