PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_211093g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C2H2 | ||||||||
Protein Properties | Length: 148aa MW: 16691.1 Da PI: 9.9089 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 18 | 41 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg + s + +Lk Hi + H MA_211093g0010 18 YCCKTCGITRSKRVLLKLHIISsH 41 88******************9888 PP | |||||||
2 | zf-C2H2 | 20.8 | 1e-06 | 67 | 88 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cg sF+ + +Lk+H +H MA_211093g0010 67 VCPECGVSFNKPAHLKQHKLSH 88 8*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 16 | 18 | 41 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.76E-6 | 62 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-8 | 65 | 90 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 66 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.04 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.115 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MATEEEKGSK RPKDLRRYCC KTCGITRSKR VLLKLHIISS HGREALENDE RFASKAEGQS 60 QRRSPCVCPE CGVSFNKPAH LKQHKLSHTG QFFSAGGSHP NSTVVREGRV ISTRWGDPLR 120 SSFCLLLAHA SSLLYIFSCN YREHLFAQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109651 | 1e-83 | BT109651.1 Picea glauca clone GQ03211_B12 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2981 | 16 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 7e-15 | transcription factor IIIA |