PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_16752g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TCP | ||||||||
Protein Properties | Length: 274aa MW: 28908 Da PI: 9.1189 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.6 | 7.3e-41 | 105 | 220 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+++tgt++++a+ + ++s +ss+s+ s++ MA_16752g0010 105 PAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIIAATGTGTIPANYStLNVSLRSSNSSISAShhtkalpl 200 6899*****************************************************************777655555555552222222233333 PP TCP 89 ...................k 89 + MA_16752g0010 201 afhgtlglgpnvdmgarldH 220 33333333333333222221 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.4E-39 | 110 | 217 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.07 | 111 | 165 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MESGGGGDHG RPPLKLSSSS QEPTMASTSA SASAYEGRGG LVGSYVPTSS TSRVDSHMNI 60 ASTQPVDASL AMSMSSATTS NNETPISTSQ QQQETVALDP NKKAPAKRSS TKDRHTKVDG 120 RGRRIRMPAT CAARVFQLTR ELGHKSDGET IEWLLQHAEP AIIAATGTGT IPANYSTLNV 180 SLRSSNSSIS ASHHTKALPL AFHGTLGLGP NVDMGARLDH QLRARNEWER AENRTSMELA 240 VAANRQSEDR RLQIGGGGGE MGHGGGGDHM LGFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011071008.1 | 2e-52 | transcription factor TCP15 | ||||
Refseq | XP_021890638.1 | 2e-52 | transcription factor TCP15 | ||||
Refseq | XP_021901654.1 | 8e-52 | transcription factor TCP8-like | ||||
Swissprot | Q9C518 | 6e-47 | TCP8_ARATH; Transcription factor TCP8 | ||||
TrEMBL | A0A0D6R148 | 1e-105 | A0A0D6R148_ARACU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_128.6 | 8e-52 | (Carica papaya) | ||||
STRING | evm.model.supercontig_30.48 | 3e-51 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 5e-43 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Publications ? help Back to Top | |||
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