PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_10430070g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 368aa    MW: 41406.6 Da    PI: 8.4689
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_10430070g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.6e-159861699
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      l++p  f++   ++   +k+  le +sg++W v++ +++++  + +++ W+ Fv+++ L++gDf+vFk++g+s f   v++f +
  MA_10430070g0010  9 LRIPPAFVRLLRYQV--HKDAFLEGPSGQVWLVTVHFTNTG--MAFEQSWQTFVSDHSLDVGDFLVFKYVGKSHF--IVQIFGR 86
                      789999998887774..458***************877777..55999***********************9999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.07187IPR003340B3 DNA binding domain
SMARTSM010192.9E-10587IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-18789IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.28E-20789IPR015300DNA-binding pseudobarrel domain
CDDcd100178.88E-16984No hitNo description
PfamPF023622.5E-13986IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLGDFRTVLR IPPAFVRLLR YQVHKDAFLE GPSGQVWLVT VHFTNTGMAF EQSWQTFVSD  60
HSLDVGDFLV FKYVGKSHFI VQIFGRSGCE KRDAFNVRKS RAYCMNDGTE KWQDSRRGNT  120
NVENFCSPLD KTGIDLAHND KSNEDDEVQV LETAPNTNFM GENSMQTNST RKKARISSGY  180
KPDTLCNYRN SKDAVGTKEN IVKLGSSTTN YLEGEKEAGF PKSQPIVIDS EEESIQQTWT  240
ADGSKMSVAE AVSSPTCAVN FDKPLCHAVQ LVKDTKIGKQ THHTPKDAGK NYVSTHYVSC  300
RRPVTQAERK KTLQAAQSFK SSKPFSLLTM KQSQVYQGFW LVSTIPLNFL PYCHVPFTKH  360
GEICTDTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167870.0BT116787.1 Picea glauca clone GQ03806_L20 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89721014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein