PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043287
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 349aa    MW: 37943.3 Da    PI: 7.9884
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043287genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-0976101127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+ C  f   GtC+ G++C+FaHg+
  Lus10043287  76 FKTRMCAKFKT-GTCRNGENCNFAHGM 101
                  69*******99.*************95 PP
2zf-CCCH22.81.6e-07149172225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  k++lC+ f  + +C+yGdrC+F H
  Lus10043287 149 KMKLCKKFCNGEECPYGDRCNFLH 172
                  7899******66************ PP
3zf-CCCH41.62e-13239264126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f  tG+C++G++C+FaHg
  Lus10043287 239 WKTRLCSKFEITGHCPFGEKCHFAHG 264
                  8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-873106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-1475108IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-575101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.26375102IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-676101IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817147175IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023147174IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7147174IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-5149172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-9149173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-15234268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-10235269IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666238266IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10239264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSYSDSQPHF TQPCYQSGSD AIGIWPQFSM SGMNEQFDQP PYKRAKNSDD DNSVHLTNSR  60
LPSNPPVNRG TTCIFFKTRM CAKFKTGTCR NGENCNFAHG MQDLRQPPPN WQELAGVGSG  120
GGGGGGRVDE DNRPSPAVNW EDDQRIIHKM KLCKKFCNGE ECPYGDRCNF LHEDPAKFRS  180
DAAGRFRESA AISIGTTGMP MVHHGNGGGY SAGEVVVRPA QSGGSDPLRV ANNVKPVYWK  240
TRLCSKFEIT GHCPFGEKCH FAHGLSELHA NGGRLEGDSA SQGTILSKPS VFGNGGNPSS  300
YMTSGVAEES EGGKKCLVKW NGRKKINRIY GDWLDDLPLA QNLTNVQS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043287
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046665.11e-149PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X1
SwissprotQ9LT818e-95C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLB9SEP01e-147B9SEP0_RICCO; Uncharacterized protein
STRINGLus100432870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83333345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-95C3H family protein