PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041908
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 299aa    MW: 33203.2 Da    PI: 6.4113
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041908genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-092978154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 r++ +  rEr RRdr+N+ f eL   l +      +K++Ka+iL+ +++ +k+L
  Lus10041908 29 RKVQKADRERLRRDRLNEQFLELGHTLDPE----RPKNDKATILTDTIQILKDL 78
                 5677889******************99886....69***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2812878IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-132998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1129100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-72978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-63484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MNQRKAADDS IHEPRQREEV ETKDPIAARK VQKADRERLR RDRLNEQFLE LGHTLDPERP  60
KNDKATILTD TIQILKDLTS EVDRLKTECA TLSEESRELM QEKNELREEK ASLKSDVENL  120
NIQYQQRLRV MFPWGPVDPS VVMGPAYSYA VPVPVPPGPM PMHHPQMQPF PFFRNQPPNA  180
ATFMPYPTPP NPPNEHPSAQ SAAAASHASS KPDPKSKSVG SHTESCDDSA DVATELVLKM  240
PGSSSQQEVP AVERKRKQLQ RKEKDVGCVV SSSSMSSSPL TIYDNSSNSV NDAGSSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13742RLRRDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041908
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815506.11e-121transcription factor bHLH121-like
RefseqXP_021815513.11e-121transcription factor bHLH121-like
SwissprotQ9LT238e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A314YAC21e-120A0A314YAC2_PRUYE; Transcription factor bHLH121
STRINGLus100419080.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-46bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]