PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041704
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 974aa    MW: 109954 Da    PI: 8.2212
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041704genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1176.72.9e-55231402118
         CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 
                  l+e ++rwl++ ei++iL n++k++++ e+++rp+sgs++L++rk++ryfrkDG++w+kkkdgktvrE+he+LK g+++vl+cyYah+e n++fqrr+
  Lus10041704  23 LQEaQHRWLRPPEICQILSNYKKFRISPEPQNRPPSGSIFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKSGSIDVLHCYYAHGEGNENFQRRT 120
                  56669********************************************************************************************* PP

         CG-1  99 ywlLeeelekivlvhylevk 118
                  yw+Leeel ++vlvhy++vk
  Lus10041704 121 YWMLEEELLHVVLVHYRDVK 140
                  *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.619145IPR005559CG-1 DNA-binding domain
SMARTSM010767.3E-7622140IPR005559CG-1 DNA-binding domain
PfamPF038594.1E-4925139IPR005559CG-1 DNA-binding domain
SuperFamilySSF812967.7E-14398484IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.206.1E-15578692IPR020683Ankyrin repeat-containing domain
CDDcd002041.52E-11578690No hitNo description
PROSITE profilePS5029715.565579692IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.55E-15583693IPR020683Ankyrin repeat-containing domain
PfamPF000230.0022631662IPR002110Ankyrin repeat
PROSITE profilePS500889.538631663IPR002110Ankyrin repeat
SMARTSM002480.007631660IPR002110Ankyrin repeat
SuperFamilySSF525407.43E-7792848IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001515797819IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.565799827IPR000048IQ motif, EF-hand binding site
PfamPF006120.057800818IPR000048IQ motif, EF-hand binding site
SMARTSM000150.045820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.889821845IPR000048IQ motif, EF-hand binding site
PfamPF006122.5E-4825842IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MAESSLSPLG NQPGWSEDIH RLLQEAQHRW LRPPEICQIL SNYKKFRISP EPQNRPPSGS  60
IFLFDRKVTR YFRKDGHNWR KKKDGKTVRE AHERLKSGSI DVLHCYYAHG EGNENFQRRT  120
YWMLEEELLH VVLVHYRDVK QGSSRASFYR VKETAETISH SQKTDDARIN SEMDTSASSN  180
YHSGTYQMHA QATNTENLVG GAKVSEYEDV ESVEANSVIG NGLAYESRGQ VGLPTWENDL  240
ENCNYGTEHI PPDFRVPIKA DNAPTHSRQG DLLGKMFMSS FSKWQESTSH EAIKEQWQRP  300
DAHNSMKSEK ESEHHSSMKH HLLDGSQRDG LTKLDSFNRW MSNELGDVDE SPVHSTSATY  360
WQTVESEDGV DNSNVPPQSD MEPYLMAPSL ANDQLFSIID FSPSWVYVGT EVKVLIIGRF  420
LKSQQDLKTY RWSCMFGEVE VAAEVIAEGV LRCYNPLLRA GRIPFYVTCS NRTACSEVRE  480
FEFRDSIVQD MDDTNSCSSI EIIQVRLGKL LCTSLDSTQN FNQSDASEIS QLSSKIRALL  540
KKDGDEWDLM LKSTSEEGFS AQKVKDQLLQ KLLKEKLHDW LLQKVVEGGK GPSVLDEGGQ  600
GVLHLAAALG YDWALEPTTV AGVRVDFRDL NGWTALHWAA SCGRERTVAS LINLGAAPGA  660
LTDPTPRNPT SITPADLAST NGHKGIAGFL AEFALTSHFT TLAVDRLNGN GDISGTNVQM  720
HSEACVNVDL PQGESMKDSL AAVRNAAQAA ARIHQVFRVQ SFQRKQVKEN GDGKLRISKE  780
EALALIKVKG NKKLDKPVEA AAVRIQNKFR SWKGRREFLV IRQQIVKIQA HVRGHQVRKN  840
YRKILWSVGI MEKVILRWRR KRSGLRGFKP ELLTASRSIK LHSSAREDDY DFFKEGRKQT  900
EERSLIALAR VKSMVQYPDA RDQYRRLRNQ IKGTKLDTGS EATRISDIVA LESPSDYDTF  960
MRTASPSDLM KRR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10041704
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8308240.0EU830824.1 Linum usitatissimum clone LU0031G03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020541148.10.0calmodulin-binding transcription activator 3 isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLV4S2590.0V4S259_9ROSI; Uncharacterized protein
STRINGLus100417040.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82842735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]