PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039124
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 297aa    MW: 32623.4 Da    PI: 6.9419
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039124genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.43.2e-331569155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rlrWt+eLHerFv+ v+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Lus10039124 15 KQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9691272IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-311470IPR009057Homeodomain-like
SuperFamilySSF466894.66E-171469IPR009057Homeodomain-like
TIGRFAMsTIGR015579.9E-251570IPR006447Myb domain, plants
PfamPF002493.9E-81768IPR001005SANT/Myb domain
PfamPF143792.7E-21101152IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDPGNHMDNN SLASKQRLRW THELHERFVD SVAQLGGPDR ATPKGVLRVM GVQGLTIYHV  60
KSHLQKYRLA KYLPDSSSDG NKTDKKETGD MVSNLDGSSG MQITEALKLQ MEVQKRLHEQ  120
LEAIFSGVQR QLQLRIEAQG KYLKKIIEEQ QRLSGVLSEG PGSGVPQGSA DPESDKTDPA  180
TPVPTTETPL QDKATKERGM NKSLSVDETL HHHHHPEPMT PDSQGDMVGS PDDSPTAERS  240
LKKQRLNMGG TQQYGKQDLL AQHRILESSL NSYAQSHAHA GFAASREAFD HPSSGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-241572158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-241572259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538214.11e-145myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-121PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A067KB231e-144A0A067KB23_JATCU; Uncharacterized protein
STRINGLus100391240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-123G2-like family protein