PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038734
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 280aa    MW: 30672.3 Da    PI: 6.8568
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038734genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.62.9e-331468155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 k+rlrWt+eLHerFv+ v+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Lus10038734 14 KQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 68
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9691171IPR017930Myb domain
SuperFamilySSF466894.12E-171368IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-311369IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-251469IPR006447Myb domain, plants
PfamPF002493.6E-81667IPR001005SANT/Myb domain
PfamPF143791.3E-10100136IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPGNHMDNS LASKQRLRWT HELHERFVDS VAQLGGPDRA TPKGVLRVMG VQGLTIYHVK  60
SHLQKYRLAK YLPDSSSDGN KTDKKETGEM VSNLDGSSGM QITEALKLQM EVQRQLQLRI  120
EAQGKYLKKI IEEQQRLSGV LSEGPGSGVP PGSADLESDK TDPATPVPTT ETPLQDKAAK  180
ERAMNKSLSI DETLHQHHHP EPMTPDSQGD MVGSPDDSPT AERSLKKQRL SMGTQQYGKQ  240
DLLAQHRILE SSLNSYAQSH AHAGFAAGRE PFDHPSSGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-241471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-241471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-241471158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-241471158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-241471259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538214.11e-137myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-110PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A067KB231e-136A0A067KB23_JATCU; Uncharacterized protein
STRINGLus100387340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-108G2-like family protein