PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10033592
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 281aa    MW: 30700.9 Da    PI: 10.3707
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10033592genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-10188231755
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++ +L+el+P+       K++ +++LekA+ Y+k Lq
  Lus10033592 188 IAAKNRRERISERLKTLQELVPNG-----SKVDLVTMLEKAISYVKFLQ 231
                  5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-11181235No hitNo description
Gene3DG3DSA:4.10.280.106.7E-13182240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14184243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-12187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-7189231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNSVQNSSDR RRSSVTMKTN HSRNNSATMS NNSSSSSLGS RNSTTTTSNN VDQQQHQHFL  60
FHAPDPHLHA PLDPLHHRSL IDFRGGSGSL LTFDHPSTAW ENFNGGWDGP MGNNNGANPP  120
DLSTTQEFNA VYHPTAKDDT PKRPNLGESL QPQKKQCNSS GSAATNSKPT TNKIAAKSVL  180
ESKDPQSIAA KNRRERISER LKTLQELVPN GSKVDLVTML EKAISYVKFL QLQVKVLAMD  240
EFWPAQGARA PDISQVKEAI DAILSTQRAR KSSSSNSNSR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10033592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012077828.11e-63putative transcription factor bHLH086
TrEMBLA0A067KLM13e-62A0A067KLM1_JATCU; Uncharacterized protein
STRINGLus100335920.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.12e-53ROOT HAIR DEFECTIVE6