PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 470aa MW: 52692.4 Da PI: 9.6811 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.2 | 2.3e-16 | 27 | 112 | 5 | 97 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++sd +++ lv+p +fa+++ k + t+ l+ +s +sW+v + + ++++ ++++GWkeF++++ L + ++F+++g+ f v vf Lus10032873 27 FLHSDFNTH--LVIPARFAKKMRTK--LPATVNLKGPSRNSWSVGVE-SSNDETLFFSSGWKEFAQDHCLHSTNLLIFRYNGDALF--DVLVF 112 444444444..9*******999755..889****************3.5555669*************************997666..66665 PP | |||||||
2 | B3 | 50.2 | 4.7e-16 | 363 | 446 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f++v+++ +v + +++p +++h +g e+++++l+ g +W+v+++ r k+++ lt GW+ F+++n Lk+ D+++F+ ++ Lus10032873 363 FITVMKTTHVKTCFYMTIPMAWMKTHmDGR--EKQEVILRV-GGGEWRVRYKLREKRDSGGLTHGWRTFAEDNSLKQFDVCLFQPSK 446 8999**********************6444..334777665.999********99999999**********************9544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.04E-19 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.479 | 21 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-10 | 24 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.74E-15 | 24 | 113 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-20 | 24 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 3.7E-13 | 26 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 360 | 468 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-14 | 363 | 446 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-9 | 363 | 454 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.561 | 363 | 469 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.12E-16 | 363 | 448 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-20 | 363 | 468 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MESGSRTSSW EEEIYWNNFQ YTHFSTFLHS DFNTHLVIPA RFAKKMRTKL PATVNLKGPS 60 RNSWSVGVES SNDETLFFSS GWKEFAQDHC LHSTNLLIFR YNGDALFDVL VFDLESSCEK 120 ASSYFARKKE TRKKMRGDTP ATTSSTGFIA PSPEQQNQTG DTKPSTCQPV ISESPKKRAR 180 TGWTKPTASR DWKSAPEKSR RRALKLASYF TARKQGTGNK IKRARAEMEN PVNHSGWKPA 240 AEESNQKVLK SASYFCVQNQ EMGGSTTATK SVSSEGFVCN DSDINKGTPP AAEKSGEDGN 300 GIHTKTPALP TCPPIICELS NKRAREELTK PVVMNNDSWK TVSEESKLKA IRAARYALKE 360 DGFITVMKTT HVKTCFYMTI PMAWMKTHMD GREKQEVILR VGGGEWRVRY KLREKRDSGG 420 LTHGWRTFAE DNSLKQFDVC LFQPSKSSYN VPGADAAADI VLDVEIFRC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 180 | PKKRART |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032873 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10032873 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032873 |