PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10032749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11411 Da PI: 9.9043 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.2 | 5.4e-12 | 5 | 68 | 32 | 98 |
--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + t+t++ +s +W+ + ++ +++++++ W+eF+ n L+ +D +vFk++++s+f v++++ Lus10032749 5 LPETVTVRGPSKIEWRAGSTAEN-DSGVFFSLSWREFAANNSLQPNDLLVFKYSDDSGF--DVGIVD 68 5679**************96444.45688999*********************999999..888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.124 | 1 | 70 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.89E-12 | 4 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-10 | 4 | 68 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-11 | 4 | 69 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-8 | 5 | 66 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MRHKLPETVT VRGPSKIEWR AGSTAENDSG VFFSLSWREF AANNSLQPND LLVFKYSDDS 60 GFDVGIVDPA ISCETLHWIS PGKLRHLNGV VRLSQLQRRK K* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10032749 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D2QJW5 | 1e-13 | A0A0D2QJW5_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2S570 | 1e-13 | A0A0D2S570_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2TND1 | 1e-13 | A0A0D2TND1_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2TND7 | 2e-13 | A0A0D2TND7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2TT17 | 5e-14 | A0A0D2TT17_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2TT21 | 2e-13 | A0A0D2TT21_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A0D2UR56 | 2e-13 | A0A0D2UR56_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8HKR4 | 2e-13 | A0A1U8HKR4_GOSHI; B3 domain-containing protein REM16-like isoform X1 | ||||
TrEMBL | A0A1U8HRR1 | 2e-13 | A0A1U8HRR1_GOSHI; B3 domain-containing protein REM16-like isoform X2 | ||||
TrEMBL | A0A2P5Q955 | 2e-13 | A0A2P5Q955_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5XFT9 | 2e-13 | A0A2P5XFT9_GOSBA; Uncharacterized protein | ||||
STRING | Lus10032749 | 6e-70 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4446 | 26 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10032749 |