PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032746
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 339aa    MW: 37524.8 Da    PI: 6.5852
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032746genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.7e-32129182255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Lus10032746 129 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 182
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15126183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-28127183IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23129182IPR006447Myb domain, plants
PfamPF002492.2E-7130181IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMMMRNTSIV SGAALFPDLS LQISPPSDHL LMKSAAATLY YSDTSTTDSG SSGSDFSRDI  60
IINNNIEPTL NLGSLDHHHH HLLLHHQCLG IPRDLNHQYH PHIYGRDFKR SSGRSAIKGG  120
GGRRSVRAPR MRWTTTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY  180
RTVKSTDKSP LLPGGGGHVV SHTSDDDNIT NNNGEEAIID LEAAKEEEEE DGDGYRKLLA  240
ADPDSPPQPT ITENVSWSSS IDRDSNNIRL SRPLTHSHNN GHDIATKEEK GGELRRLTRT  300
SEMLVNLEFT LGRPSWQRDD VVDYVAESSN YDLTLLNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-17130184357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-17130184357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-17130184357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-17130184357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032746
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100327460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.11e-53G2-like family protein