PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10032098
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 592aa    MW: 65779.5 Da    PI: 5.6667
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10032098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-1382171299
                  EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +kv++ps+v+   +l l k f+++h  +     ++++ lede+g++ + k+    ++ +  l++GWk+F  +++L  gD++vF+l++ ++f  +v++ 
  Lus10032098  82 IKVMLPSHVTGGFWLGLMKGFCDKHlpD----DDTMMDLEDENGEVRQAKF--LANKPG--LSGGWKGFSISHQLVIGDVIVFQLVKPTRF--KVHIA 169
                  699**********************532....4579********9999999..444433..9**********************9987777..88877 PP

                  -S CS
           B3  98 rk 99 
                  r+
  Lus10032098 170 RA 171
                  65 PP
2B346.18.8e-15262350298
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +kv++ps+v     l+l k f ++h   ++e+++l lede+g+  + k+    ++++  l++GW+ F  +++L  gD++vF+l++ ++f  +v + r
  Lus10032098 262 IKVMLPSHVAGGFSLSLTKGFGAKHL--PHEDTMLDLEDEDGKIHTAKY--LVHRQG--LSGGWRAFSIDHKLVPGDVLVFQLVEPTKF--KVYIAR 350
                  699*******************9**5..346789***************..777766..9**********************9876776..777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-1774172IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1975172IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1979170No hitNo description
SMARTSM010191.2E-1681172IPR003340B3 DNA binding domain
PROSITE profilePS5086310.27881172IPR003340B3 DNA binding domain
PfamPF023624.8E-1282171IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-17255353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-19256352IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-21259350No hitNo description
SMARTSM010194.2E-15261352IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757261352IPR003340B3 DNA binding domain
PfamPF023622.5E-12262351IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MTVLQVKKEQ DAKGKTPMMK MNDILSFTKQ EGSIIQIKST LSQTGKKATK ESIYVNSEVE  60
KAVMMKAKRI ESSLPRNYPT MIKVMLPSHV TGGFWLGLMK GFCDKHLPDD DTMMDLEDEN  120
GEVRQAKFLA NKPGLSGGWK GFSISHQLVI GDVIVFQLVK PTRFKVHIAR ASGLEENAVV  180
GLLQTDNIKE QVDSGDANSN SIGASDSSDT DSLVVPSKST ISKTRERVAV DRLYNDVEVE  240
NLVLLKAQEV KASLPKNFPT MIKVMLPSHV AGGFSLSLTK GFGAKHLPHE DTMLDLEDED  300
GKIHTAKYLV HRQGLSGGWR AFSIDHKLVP GDVLVFQLVE PTKFKVYIAR ASGSDEVDVA  360
LGLLQMDSDG EKMISDNLPK GYRESNSEGH QSDDGFGFDI SDGIRMFEST AIDFEQVKSF  420
DDFDIVVNGL VINCELSKHL RLKYYELCSS QKLFLHAHIL SGLNCKLIVG VIAETINIAD  480
AIRASKFSGG ALQQMEDFLT WEKTLMAFEK LGMNVEFILT RLRQLMGLCG NASRHKRLRT  540
ERIQIEEEVE ILKAKLEESV ERIKRIDGEM EVDEVDVEVK FGDLAEAPWS L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10032098
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021652673.11e-128B3 domain-containing protein Os01g0234100-like
STRINGLus100320980.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-35B3 family protein