PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10031349

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

bZIP

Protein Properties

Length: 367aa MW: 41332.7 Da PI: 8.6559

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10031349	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.3	5.2e-11	83	120	3	40
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 +k++rr+++NReAAr+sR+RKka++++Le+ +L + Lus10031349 83 NIKAQRRLAQNREAARKSRLRKKAYVQQLETSRLKLAQ 120 689***************************85444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.2E-9	80	128	No hit	No description
SMART	SM00338	9.9E-4	81	138	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	83	127	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-7	83	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.19E-7	84	128	No hit	No description
PROSITE pattern	PS00036	0	88	103	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.8E-29	169	243	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMSSPTTQLA ILRGMGIYEP FQQISSWTAD PFRGDSILNI TPSPTPPIPP LENRTDNVSH 60 ESITEPSRSD QEGVGGRPYD NNNIKAQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLAQ 120 LEQELQRARQ QGMYINNDMD FGVPGISNSG IATFEMEYAH WIEEQHTKVS ELRRALQSHI 180 RDVELRILVE NGFAHFNSLF RMKAEAAKAD VFYIISGKWR TSVERFFLWI GGFRPSELLN 240 VLLPQLEPLT DQQHCDVCTL RQSSQQAEDA LSQGIDKLQQ TLSQSLAVDQ SIGGSYRVQM 300 AAAIERLEGR EGVANQAGHL GSQTLHHMSR ILTTRQAARG LLALGEYLER LRALSSLWAA 360 RPREPT*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMSSPTTQLA ILRGMGIYEP FQQISSWTAD PFRGDSILNI TPSPTPPIPP LENRTDNVSH  60
ESITEPSRSD QEGVGGRPYD NNNIKAQRRL AQNREAARKS RLRKKAYVQQ LETSRLKLAQ  120
LEQELQRARQ QGMYINNDMD FGVPGISNSG IATFEMEYAH WIEEQHTKVS ELRRALQSHI  180
RDVELRILVE NGFAHFNSLF RMKAEAAKAD VFYIISGKWR TSVERFFLWI GGFRPSELLN  240
VLLPQLEPLT DQQHCDVCTL RQSSQQAEDA LSQGIDKLQQ TLSQSLAVDQ SIGGSYRVQM  300
AAAIERLEGR EGVANQAGHL GSQTLHHMSR ILTTRQAARG LLALGEYLER LRALSSLWAA  360
RPREPT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10031349

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021656707.1	0.0	transcription factor TGA7
Refseq	XP_021656716.1	0.0	transcription factor TGA7
Swissprot	Q93ZE2	1e-149	TGA7_ARATH; Transcription factor TGA7
TrEMBL	B9RJD3	0.0	B9RJD3_RICCO; Transcription factor TGA7, putative
STRING	Lus10031349	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1096	34	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-131	bZIP family protein

Link Out ? help Back to Top
Phytozome	Lus10031349

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]