PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10030824 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 19969.9 Da PI: 8.2237 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73 | 2.4e-23 | 19 | 65 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i s qvtfskRr+g++KKA+EL++LC++e+avi+fs+ gk+y + Lus10030824 19 ILKRSHLQVTFSKRRAGLFKKASELCTLCGVEIAVIVFSPAGKIYSF 65 5566778**************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 21.726 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-26 | 9 | 68 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-17 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-24 | 12 | 81 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.8E-25 | 18 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-17 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.7E-17 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MASNKPSNNS PQKLPIKKIL KRSHLQVTFS KRRAGLFKKA SELCTLCGVE IAVIVFSPAG 60 KIYSFGHSDV VSIVRKFLTS AVSHHPPSVE APSQITPEAR ELNAELTLVL SELEVERKQG 120 EVLDRMLKAQ EAEYGLSIAT LGLDGLARLR NALEELQLNV ENQKISEGYE YGNFSENWSF 180 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10030824 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011088151.1 | 6e-50 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A4D9BG81 | 2e-47 | A0A4D9BG81_SALSN; Uncharacterized protein | ||||
STRING | Lus10030824 | 1e-129 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 9e-30 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
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Phytozome | Lus10030824 |