PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10028791 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | DBB | ||||||||
Protein Properties | Length: 220aa MW: 24159.8 Da PI: 6.7153 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 26.8 | 1.1e-08 | 3 | 45 | 4 | 39 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +C+ ++ e++ +C+ ++ lC++C H+ H++ Lus10028791 3 IRCDVCDGSEATVYCTADEAALCASCDRRVHHAnklagkhHRF 45 58******99********************6445888886766 PP | |||||||
2 | zf-B_box | 26.7 | 1.2e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++ek++ lfC++++ lC++C +H+ Ht Lus10028791 54 DAPLCDICQEKRAFLFCHEDRAILCRECDIPIHSAneHT 92 5789*****************************657765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.808 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-7 | 3 | 44 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.65E-6 | 3 | 47 | No hit | No description |
SMART | SM00336 | 1.5E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.182 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-7 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.43E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKIRCDVCDG SEATVYCTAD EAALCASCDR RVHHANKLAG KHHRFSLLHP SFQDAPLCDI 60 CQEKRAFLFC HEDRAILCRE CDIPIHSANE HTQRHSRFLL TGVKLSAFSA HYDPTTTAKI 120 NTTSNTAGSS CCRSSSTPSQ APPQQPAVTY SNKRRVQWDQ GGSPGSYSVD ESAHVSYSGD 180 TTGSNISEYL DTLPGWRVDD FLEPAAGKYS GDFWTTPYM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10028791 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011037185.1 | 2e-80 | PREDICTED: B-box zinc finger protein 20-like | ||||
Swissprot | Q9LQZ7 | 1e-64 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A2K2AVH0 | 1e-77 | A0A2K2AVH0_POPTR; Uncharacterized protein | ||||
STRING | Lus10028791 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1448 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-62 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10028791 |