PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10027110
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 291aa    MW: 31949.5 Da    PI: 5.7225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10027110genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46
                     rg WT+eEd +l  ++ q+G+++W++I++      gRt++++k++w++
      Lus10027110 14 RGQWTPEEDNKLSSYISQHGTRNWRLIPKNAAqlPGRTDNDVKNHWNT 61
                     89***************************999999***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-23568IPR009057Homeodomain-like
PROSITE profilePS5129424.742967IPR017930Myb domain
SuperFamilySSF466893.16E-16972IPR009057Homeodomain-like
SMARTSM007172.7E-141365IPR001005SANT/Myb domain
PfamPF002492.5E-151461IPR001005SANT/Myb domain
CDDcd001674.37E-141763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIS QHGTRNWRLI PKNAAQLPGR TDNDVKNHWN  60
TKLKKKLSGM GIDPVTHKPF SHLMAEIATT LAPPQVAHLA EAALGCFKDE MLHLLTKKRI  120
DFQLQNHSSN SNQGGGGGVN NLLHSSSMPS YIAAAKHKDN DEDTIEKIKL GLSRAMQQEQ  180
PDMMFPNKNW DSNSQPGAAH FSNMFQCGPS SFGNEGAVSP WSQSMCTGST GGDQQGQLHD  240
KLEEDDDDNV EGECEGGKED VRNNGSSSIF SADCVLWDLP SHDLMNTMVE *
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10027110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021678281.11e-132transcription factor MYB80
SwissprotQ7XQN12e-74MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A067KMW71e-131A0A067KMW7_JATCU; Uncharacterized protein
STRINGLus100271100.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108783039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.16e-73myb domain protein 103