PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10026854

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

FAR1

Protein Properties

Length: 305aa MW: 34134.3 Da PI: 6.798

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10026854	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.3e-21	122	223	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerr.........traetrtgCkaklkvkkekdgkwevtk 80 fY +YA++ GF vr++ +++ r+g ++ rt vC+keg+++e++k + + a r+gC+ak+ k+ ++gkw v++ Lus10026854 122 FYTAYAQRNGFGVRVRDHSRG-REGFVVARTIVCNKEGFKKEKEKVnnitylkkknE----KlktaalalpAAAPFRMGCNAKVAFKRLETGKWTVKR 214 9**************9998.8888************999989999976540....233455666678889******************** PP FAR1 81 leleHnHel 89 + +eHnH+l Lus10026854 215 FIKEHNHPL 223 *****99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-19	122	223	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDGPDLSLES QTVTLWGRRA RDEADHFGRL GFRVHPSVPA MSSIRFFTSG DEVYSKPTMD 60 SDGGGGSDGN PDPISGDEGA ASAPDLNRNE SSSNREKETA VVDPDEPYVG REFDSEAESV 120 AFYTAYAQRN GFGVRVRDHS RGREGFVVAR TIVCNKEGFK KEKEKVNNIT YLKKKNEKLK 180 TAALALPAAA PFRMGCNAKV AFKRLETGKW TVKRFIKEHN HPLYVQELFS CPRVLQIPAD 240 DRIVHQLNEE LAKERMRSAS LRELVQVLLN HIEEHTQGLS QKVECMVEKV NKIDDSREKE 300 HIAE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10026854

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Lus10026854	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-33	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Lus10026854