PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10026432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 456aa MW: 51111.6 Da PI: 7.2054 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.3 | 2.6e-08 | 368 | 405 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F++ ++yp+ +e+ LA k gLt +qV++WF N R + Lus10026432 368 FHNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 405 776679******************************87 PP | |||||||
2 | BELL | 85.5 | 6.2e-28 | 250 | 319 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +q+lq+kk++Llsll++Vd+rY+q+v++++t++s+F+a+++l++ +++t++Al++iS+ ++ Lk +i++qi Lus10026432 250 KQALQAKKVQLLSLLQMVDNRYNQCVDEIHTIVSAFHAATELDP-QIHTRFALQTISFMYKDLKGRISNQI 319 799*****************************************.************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.2E-28 | 180 | 317 | IPR006563 | POX domain |
Pfam | PF07526 | 6.2E-29 | 185 | 316 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 10.754 | 346 | 409 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-25 | 349 | 421 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.23E-10 | 349 | 410 | No hit | No description |
SMART | SM00389 | 3.1E-5 | 349 | 413 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.3E-15 | 351 | 419 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.5E-14 | 366 | 405 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MENDLYTNVG MDMESRNWFR ASSADRMTSQ EGTTSSPLLL HSIDFNNRQQ QNQRSVYYRS 60 MLVEPSNNNN MFHHLHQDAH ALSYSGPSLL HPLEMAANYQ VPNDSGVLPF ALEGGYGGFE 120 SSCSPELVSC YNIDCGVELS TENPPPCSRI SNKLCLSLAT SQNSEQICSN RNELSLYRGG 180 RFSQVVSGSK YLNVVQEILG QIASCSLENL DTPSYSITSG ASAQTSWHHP AAEQGVQAFE 240 IQPPDPALQK QALQAKKVQL LSLLQMVDNR YNQCVDEIHT IVSAFHAATE LDPQIHTRFA 300 LQTISFMYKD LKGRISNQIL VMGPDYSCND LEKQWSLGQQ LKKKEHQFWR PQRGLPERSV 360 AVLRAWMFHN FLHPYPKDAE KHLLAVKSGL TRSQVSNWFI NARVRVWKPM IEEMYAEMNR 420 RKGPSGTTTT NSSSNLTTSQ ISIRNPILVP APPAL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10026432 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021596775.1 | 1e-125 | homeobox protein ATH1-like | ||||
Refseq | XP_021596776.1 | 1e-125 | homeobox protein ATH1-like | ||||
Swissprot | P48731 | 3e-98 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A2C9UA03 | 1e-123 | A0A2C9UA03_MANES; Uncharacterized protein | ||||
STRING | Lus10026432 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5939 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-89 | homeobox gene 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10026432 |
Publications ? help Back to Top | |||
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