PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10024877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 28861.1 Da PI: 7.9421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.4 | 2.4e-38 | 21 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll +lp +r +a+ +++yeA+ar+rdPvyG+v+++++lq+q++ l+a+++++ Lus10024877 21 PCGACKFLRRKCAADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHLPAADRCEAVVTIAYEAQARLRDPVYGCVAHVFALQHQVAYLQAQVVQM 118 7*************************99*******************************************************************998 PP DUF260 98 kee 100 k++ Lus10024877 119 KAH 121 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.763 | 20 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-37 | 21 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MASSGASGTS SSGGGGGAGT PCGACKFLRR KCAADCIFAP YFCSEQGPAR FAAIHKVFGA 60 SNVSKLLLHL PAADRCEAVV TIAYEAQARL RDPVYGCVAH VFALQHQVAY LQAQVVQMKA 120 HLAQNNYVMD PPRNTSNNYN STSTPYNSWQ ENNHNSTCTA ATNTTTGTVP SGEWGATVPA 180 VATNYPHCYS FNPPPNTVSP QSSPESVDYS GRGGGRAAPE DYYNYLTQQN IKYRDEEAPA 240 MFGQPTPRKR PYNNELGDLQ ALALKMMGN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 17 | 115 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 17 | 115 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10024877 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021653516.1 | 6e-83 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 7e-67 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1R3I7C4 | 2e-82 | A0A1R3I7C4_COCAP; Uncharacterized protein | ||||
STRING | Lus10024877 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4509 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-63 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Lus10024877 |